RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_kingdom = "Shotokuvirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Shotokuvirae · 7 ✖

bioproject 1

  • PRJNA1237347 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
342793 342793 PRJNA1237347_P_NODE_421381_length_271_cov_1.166667_g414808_i0 PRJNA1237347 421381 271 1.166667 3.16166757 Cressdnaviricota sp. 2748378 Viruses Viruses 52.8 0.025   NTclustered gi|1436204446|gb|MH616955.1| 2748378 g414808 i0 100 0.103321033210332 28 0 10 0 133 160 3742 3715 MAG: Cressdnaviricota sp. isolate ctbc933, complete genome blastn 28 52.8 1 Viruses   Shotokuvirae Cressdnaviricota         Cressdnaviricota sp.
1617575 1617575 PRJNA1237347_P_NODE_426442_length_269_cov_1.030612_g419869_i0 PRJNA1237347 426442 269 1.030612 2.77234628 Cressdnaviricota sp. 2748378 Viruses Viruses 448 2.6899999999999995e-121   NTclustered gi|1436204076|gb|MH616907.1| 2748378 g419869 i0 96.992 0.988847583643123 266 8 99 0 4 269 620 355 MAG: Cressdnaviricota sp. isolate ctca234, complete genome blastn 266 448 1 Viruses   Shotokuvirae Cressdnaviricota         Cressdnaviricota sp.
4172064 4172064 PRJNA1237347_P_NODE_531304_length_244_cov_0.900585_g524731_i0 PRJNA1237347 531304 244 0.900585 2.1974274 Betapapillomavirus 2 333924 Viruses Viruses 429 8.699999999999998e-116   NTclustered gi|1020234|gb|U31787.1|HPU31787 37959 g524731 i0 98.361 6.61065573770492 244 4 100 0 1 244 4093 4336 Human papillomavirus type 38, complete genome blastn 1613 429 1 Viruses   Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae Betapapillomavirus Betapapillomavirus 2
9265003 9265003 PRJNA1237347_P_NODE_13008_length_2204_cov_4.557954_g11235_i0 PRJNA1237347 13008 2204 4.557954 100.45730616 Avon-Heathcote Estuary associated circular virus 13 1618236 Viruses Viruses 922 0   NTclustered gi|761263250|gb|KM874331.1| 1618236 g11235 i0 75.885 2.69237749546279 1978 382 88 76 1 1934 1928 2 Avon-Heathcote Estuary associated circular virus 13 isolate AHEaCV-13-NZ-4754GA-2012, complete genome blastn 5934 922 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Cirlivirales Circoviridae   Avon-Heathcote Estuary associated circular virus 13
18192462 18192462 PRJNA1237347_P_NODE_318235_length_322_cov_1.236948_g311662_i0 PRJNA1237347 318235 322 1.236948 3.98297256 Galvornvirus isengard 2955925 Viruses Viruses 595 1.1099999999999995e-165   NTclustered gi|2725932850|gb|PP750563.1| 1954248 g311662 i0 100 7.18944099378882 322 0 100 0 1 322 847 526 Circoviridae sp. isolate V10 ORF10 gene, complete cds blastn 2315 595 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard
20745547 20745547 PRJNA1237347_P_NODE_481157_length_250_cov_0.870056_g474584_i0 PRJNA1237347 481157 250 0.870056 2.17514 Human papillomavirus 10566 Viruses Viruses 462 8.83e-126   NTclustered gi|1480688325|gb|MH777241.1| 10566 g474584 i0 100 3.176 250 0 100 0 1 250 2553 2304 MAG: Human papillomavirus isolate HPV-mSK_098, complete genome blastn 794 462 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
20745611 20745611 PRJNA1237347_P_NODE_485497_length_249_cov_2.011364_g478924_i0 PRJNA1237347 485497 249 2.011364 5.00829636 Galvornvirus isengard 2955925 Viruses Viruses 427 3.2e-115   NTclustered gi|1436204072|gb|MH616906.1| 1954248 g478924 i0 97.59 1 249 6 100 0 1 249 726 478 MAG: Circoviridae sp. isolate ctjd115, complete genome blastn 249 427 1 Viruses   Shotokuvirae Cressdnaviricota Arfiviricetes Rohanvirales Nenyaviridae Galvornvirus Galvornvirus isengard

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;