RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1237347" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 4 ✖

bioproject 1

  • PRJNA1237347 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1614013 1614013 PRJNA1237347_P_NODE_244202_length_380_cov_1.736156_g237629_i0 PRJNA1237347 244202 380 1.736156 6.5973928 Methanothermobacter sp. CaT2 866790 Archaea Archaea 89.8 2.76e-13   NTclustered gi|427188531|dbj|AP011952.1| 866790 g237629 i0 94.737 1.74473684210526 57 3 15 0 69 125 5369 5425 Methanothermobacter sp. CaT2 DNA, complete genome blastn 663 89.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanothermobacter Methanothermobacter sp. CaT2
1617201 1617201 PRJNA1237347_P_NODE_407702_length_276_cov_1.896552_g401129_i0 PRJNA1237347 407702 276 1.896552 5.23448352 Methanobrevibacter arboriphilus 39441 Archaea Archaea 52.8 0.025   NTclustered gi|2047640843|dbj|AP019779.1| 39441 g401129 i0 88.636 0.304347826086957 44 4 16 1 140 182 270610 270653 Methanobrevibacter arboriphilus SA DNA, complete genome blastn 84 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter arboriphilus
13099278 13099278 PRJNA1237347_P_NODE_564011_length_230_cov_4.439490_g557437_i0 PRJNA1237347 564011 230 4.43949 10.210827 uncultured Methanobacterium sp. 176306 Archaea Archaea 52.8 0.021   NTclustered gi|2621703503|emb|OY762552.1| 176306 g557437 i0 100 0.121739130434783 28 0 12 0 122 149 202712 202739 MAG: uncultured Methanobacterium sp. isolate 3f2017ab-9e69-417f-80a5-32741c1572f8 genome assembly, chromosome: 1 blastn 28 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium uncultured Methanobacterium sp.
14369971 14369971 PRJNA1237347_P_NODE_320732_length_320_cov_1.870445_g314159_i0 PRJNA1237347 320732 320 1.870445 5.985424 Methanofervidicoccus sp. A16 2607662 Archaea Archaea 52.8 0.03   NTclustered gi|1438970377|gb|CP022242.1| 2607662 g314159 i0 96.774 0.096875 31 1 10 0 290 320 741381 741351 Methanofervidicoccus sp. A16 chromosome, complete genome blastn 31 52.8 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanococci Methanococcales   Methanofervidicoccus Methanofervidicoccus sp. A16

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;