RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1233465 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25536395 25536395 PRJNA1233465b_S_NODE_118425_length_258_cov_3.971292_g116740_i0 PRJNA1233465 118425 258 3.971292 10.24593336 Amphimedon queenslandica 400682 Porifera other_Eukaryota 60.2 1.4e-4   NTclustered gi|1133462927|ref|XM_019996770.1| 400682 g116740 i0 97.222 0.13953488372093 36 0 14 1 101 136 1703 1669 PREDICTED: Amphimedon queenslandica mitochondrial import receptor subunit TOM70-like (LOC105312838), mRNA blastn 36 60.2 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Haplosclerida Niphatidae Amphimedon Amphimedon queenslandica
25672618 25672618 PRJNA1233465b_S_NODE_131146_length_248_cov_7.854271_g129461_i0 PRJNA1233465 131146 248 7.854271 19.47859208 Halisarca dujardinii 2583056 Porifera other_Eukaryota 52.8 0.022   NTclustered gi|2416149430|gb|OM982430.1| 2583056 g129461 i0 100 0.112903225806452 28 0 11 0 132 159 6962 6989 Halisarca dujardinii dynein-1-beta heavy chain (DNHD1) mRNA, complete cds blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Chondrillida Halisarcidae Halisarca Halisarca dujardinii
26237536 26237536 PRJNA1233465f_S_NODE_232710_length_167_cov_1.237288_g230430_i0 PRJNA1233465 232710 167 1.237288 2.06627096 Dysidea avara 196820 Porifera other_Eukaryota 52.8 0.014   NTclustered gi|2749515586|ref|XM_066026982.1| 196820 g230430 i0 100 0.335329341317365 28 0 17 0 77 104 15040 15067 PREDICTED: Dysidea avara uncharacterized protein (LOC136236738), transcript variant X2, mRNA blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Dictyoceratida Dysideidae Dysidea Dysidea avara

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;