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contig_metadata

18 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 18 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1233465 · 18 ✖

analysis 1

  • blastn · 18 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25681884 25681884 PRJNA1233465e_S_NODE_108506_length_186_cov_2.510949_g107196_i0 PRJNA1233465 108506 186 2.510949 4.67036514 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.016   NTclustered gi|690018475|emb|LM525713.1| 174720 g107196 i0 100 0.150537634408602 28 0 15 0 127 154 10778 10751 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000109 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25689134 25689134 PRJNA1233465f_S_NODE_143282_length_204_cov_4.948387_g141002_i0 PRJNA1233465 143282 204 4.948387 10.09470948 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.001   NTclustered gi|1376151369|ref|XM_024644170.1| 34506 g141002 i0 94.595 0.181372549019608 37 1 18 1 14 49 462 426 Strongyloides ratti Dynamin-like 120 kDa protein, mitochondrial (SRAE_2000518900), partial mRNA blastn 37 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
25809207 25809207 PRJNA1233465b_S_NODE_169259_length_224_cov_2.685714_g167574_i0 PRJNA1233465 169259 224 2.685714 6.01599936 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.002   NTclustered gi|687865940|emb|LK928062.1| 6239 g167574 i0 100 0.267857142857143 30 0 13 0 123 152 5809 5838 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000088 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25816969 25816969 PRJNA1233465d_S_NODE_77555_length_202_cov_3.307190_g76444_i0 PRJNA1233465 77555 202 3.30719 6.6805238 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.018   NTclustered gi|690018475|emb|LM525713.1| 174720 g76444 i0 100 0.138613861386139 28 0 14 0 49 76 10751 10778 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000109 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25820159 25820159 PRJNA1233465e_S_NODE_162283_length_162_cov_0.902655_g160973_i0 PRJNA1233465 162283 162 0.902655 1.4623011 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.001   NTclustered gi|687865940|emb|LK928062.1| 6239 g160973 i0 100 0.37037037037037 30 0 19 0 130 159 5809 5838 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000088 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
25959083 25959083 PRJNA1233465e_S_NODE_88188_length_203_cov_0.993506_g86878_i0 PRJNA1233465 88188 203 0.993506 2.01681718 Strongyloides papillosus 174720 Nematoda Nematoda 58.4 3.8e-4   NTclustered gi|687022674|emb|LM525588.1| 174720 g86878 i0 100 0.152709359605911 31 0 15 0 72 102 44213 44183 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000011 blastn 31 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
25959549 25959549 PRJNA1233465e_S_NODE_99228_length_193_cov_2.138889_g97918_i0 PRJNA1233465 99228 193 2.138889 4.12805577 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.001   NTclustered gi|1376151369|ref|XM_024644170.1| 34506 g97918 i0 94.595 0.191709844559585 37 1 19 1 156 191 426 462 Strongyloides ratti Dynamin-like 120 kDa protein, mitochondrial (SRAE_2000518900), partial mRNA blastn 37 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
26097522 26097522 PRJNA1233465f_S_NODE_143957_length_204_cov_1.503226_g141677_i0 PRJNA1233465 143957 204 1.503226 3.06658104 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.018   NTclustered gi|687866253|emb|LK928260.1| 6239 g141677 i0 100 0.274509803921569 28 0 14 0 62 89 36125 36152 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000572 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26101003 26101003 PRJNA1233465f_S_NODE_223789_length_170_cov_0.826446_g221509_i0 PRJNA1233465 223789 170 0.826446 1.4049582 Strongyloides ratti 34506 Nematoda Nematoda 54.7 0.004   NTclustered gi|1376137491|ref|XM_024648897.1| 34506 g221509 i0 94.444 0.211764705882353 36 1 21 1 110 144 141 176 Strongyloides ratti Hypothetical protein (SRAE_1000188700), partial mRNA blastn 36 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
26211420 26211420 PRJNA1233465a_S_NODE_118270_length_214_cov_12.193939_g116996_i0 PRJNA1233465 118270 214 12.193939 26.09502946 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.019   NTclustered gi|690018475|emb|LM525713.1| 174720 g116996 i0 100 0.130841121495327 28 0 13 0 156 183 10778 10751 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000109 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26212895 26212895 PRJNA1233465a_S_NODE_178718_length_182_cov_0.977444_g177444_i0 PRJNA1233465 178718 182 0.977444 1.77894808 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.015   NTclustered gi|687865515|emb|LK927686.1| 6239 g177444 i0 100 0.307692307692308 28 0 15 0 18 45 135174 135147 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000136 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26215655 26215655 PRJNA1233465a_S_NODE_56734_length_282_cov_1.669528_g55460_i0 PRJNA1233465 56734 282 1.669528 4.70806896 Strongyloides papillosus 174720 Nematoda Nematoda 54.7 0.007   NTclustered gi|687022714|emb|LM525628.1| 174720 g55460 i0 100 0.102836879432624 29 0 10 0 228 256 57925 57953 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000037 blastn 29 54.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26221539 26221539 PRJNA1233465d_S_NODE_102806_length_180_cov_3.022901_g101695_i0 PRJNA1233465 102806 180 3.022901 5.4412218 Strongyloides ratti 34506 Nematoda Nematoda 56.5 0.001   NTclustered gi|1376151369|ref|XM_024644170.1| 34506 g101695 i0 94.595 0.205555555555556 37 1 20 1 132 167 426 462 Strongyloides ratti Dynamin-like 120 kDa protein, mitochondrial (SRAE_2000518900), partial mRNA blastn 37 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides ratti
26227719 26227719 PRJNA1233465e_S_NODE_141742_length_167_cov_1.694915_g140432_i0 PRJNA1233465 141742 167 1.694915 2.83050805 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.014   NTclustered gi|687865486|emb|LK927790.1| 6239 g140432 i0 100 0.335329341317365 28 0 17 0 8 35 21608 21635 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_scaffold0000230 blastn 56 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26231995 26231995 PRJNA1233465f_S_NODE_104606_length_234_cov_3.518919_g102326_i0 PRJNA1233465 104606 234 3.518919 8.23427046 Caenorhabditis elegans 6239 Nematoda Nematoda 56.5 0.002   NTclustered gi|687865940|emb|LK928062.1| 6239 g102326 i0 100 0.256410256410256 30 0 13 0 158 187 5809 5838 Caenorhabditis elegans genome assembly C_elegans_Bristol_N2_v1_5_4 ,scaffold CELN2_contig0000088 blastn 60 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans
26361217 26361217 PRJNA1233465d_S_NODE_79071_length_201_cov_1.006579_g77960_i0 PRJNA1233465 79071 201 1.006579 2.02322379 Capillaria sp. cat-2 3439026 Nematoda Nematoda 52.8 0.017   NTclustered gi|1633817164|gb|MH665363.1| 2488633 g77960 i0 96.774 0.154228855721393 31 1 15 0 132 162 13017 13047 Capillaria sp. cat-2018 mitochondrion, complete genome blastn 31 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Capillariidae Capillaria Capillaria sp. cat-2018
26369608 26369608 PRJNA1233465f_S_NODE_146687_length_202_cov_4.686275_g144407_i0 PRJNA1233465 146687 202 4.686275 9.4662755 Strongyloides papillosus 174720 Nematoda Nematoda 52.8 0.018   NTclustered gi|690018475|emb|LM525713.1| 174720 g144407 i0 100 0.138613861386139 28 0 14 0 49 76 10751 10778 Strongyloides papillosus genome assembly S_papillosus_LIN ,scaffold SPAL_contig0000109 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongyloididae Strongyloides Strongyloides papillosus
26374323 26374323 PRJNA1233465f_S_NODE_258327_length_162_cov_11.867257_g256047_i0 PRJNA1233465 258327 162 11.867257 19.22495634 Caenorhabditis elegans 6239 Nematoda Nematoda 52.8 0.013   NTclustered gi|351062746|emb|FO081321.1| 6239 g256047 i0 100 0.864197530864197 28 0 17 0 63 90 194 167 Caenorhabditis elegans Cosmid F37F2, complete sequence blastn 140 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis elegans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;