contig_metadata
10 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Gemmatimonadota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25531821 | 25531821 | PRJNA1233465a_S_NODE_157145_length_192_cov_0.846154_g155871_i0 | PRJNA1233465 | 157145 | 192 | 0.846154 | 1.62461568 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 211 | 2.58e-50 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g155871 | i0 | 87.5 | 11.65625 | 184 | 21 | 95 | 2 | 6 | 188 | 3905943 | 3905761 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 2238 | 211 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 25543070 | 25543070 | PRJNA1233465d_S_NODE_29233_length_306_cov_2.003891_g28122_i0 | PRJNA1233465 | 29233 | 306 | 2.003891 | 6.13190646 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 226 | 1.59e-54 | NTclustered | gi|2874254107|emb|OY970192.1| | 412054 | g28122 | i0 | 83.265 | 13.0915032679739 | 245 | 41 | 80 | 0 | 3 | 247 | 761128 | 761372 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 | blastn | 4006 | 226 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 25544351 | 25544351 | PRJNA1233465d_S_NODE_65569_length_217_cov_1.214286_g64458_i0 | PRJNA1233465 | 65569 | 217 | 1.214286 | 2.63500062 | Gemmatirosa kalamazoonensis | 861299 | Bacteria | Bacteria | 165 | 2.3600000000000002e-36 | NTclustered | gi|575462059|gb|CP007130.1| | 861299 | g64458 | i0 | 84.756 | 2.61290322580645 | 164 | 25 | 76 | 0 | 52 | 215 | 490462 | 490625 | Gemmatirosa kalamazoonesis strain KBS708 plasmid 2, complete sequence | blastn | 567 | 165 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 25808203 | 25808203 | PRJNA1233465a_S_NODE_99995_length_229_cov_1.588889_g98721_i0 | PRJNA1233465 | 99995 | 229 | 1.588889 | 3.63855581 | Pseudogemmatithrix spongiicola | 3062599 | Bacteria | Bacteria | 233 | 6.799999999999999e-57 | NTclustered | gi|2557479348|gb|CP130613.1| | 3062599 | g98721 | i0 | 85.845 | 3.87336244541485 | 219 | 31 | 96 | 0 | 11 | 229 | 1050465 | 1050683 | Pseudogemmatithrix spongiicola strain 318 chromosome, complete genome | blastn | 887 | 233 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Pseudogemmatithrix | Pseudogemmatithrix spongiicola | |
| 25818194 | 25818194 | PRJNA1233465e_S_NODE_109307_length_186_cov_1.116788_g107997_i0 | PRJNA1233465 | 109307 | 186 | 1.116788 | 2.07722568 | Gemmatimonadota bacterium | 2026742 | Bacteria | Bacteria | 93.5 | 9.37e-15 | NTclustered | gi|2108172456|gb|CP070716.1| | 2026742 | g107997 | i0 | 80.488 | 1.58064516129032 | 123 | 23 | 66 | 1 | 29 | 151 | 1589861 | 1589982 | MAG: Gemmatimonadetes bacterium isolate bin486 chromosome | blastn | 294 | 93.5 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadota bacterium | |||||
| 25819927 | 25819927 | PRJNA1233465e_S_NODE_156427_length_163_cov_1.500000_g155117_i0 | PRJNA1233465 | 156427 | 163 | 1.5 | 2.445 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 134 | 4.72e-27 | NTclustered | gi|2874254107|emb|OY970192.1| | 412054 | g155117 | i0 | 81.875 | 2.92638036809816 | 160 | 27 | 98 | 2 | 1 | 159 | 5354741 | 5354583 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01721.bin.c.5 genome assembly, chromosome: 1 | blastn | 477 | 134 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 26031303 | 26031303 | PRJNA1233465f_S_NODE_147332_length_202_cov_1.575163_g145052_i0 | PRJNA1233465 | 147332 | 202 | 1.575163 | 3.18182926 | root | 1 | Root_unresolved | Root_unresolved | 82.4 | 2.24e-11 | NTclustered | gi|219811715|gb|FJ551929.1| | 221169 | g145052 | i0 | 100 | 37.9158415841584 | 44 | 0 | 22 | 0 | 1 | 44 | 432 | 475 | Uncultured Gemmatimonas sp. clone LTSP_BACT_P4N09 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence | blastn | 7659 | 82.4 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatimonas | uncultured Gemmatimonas sp. | |
| 26083258 | 26083258 | PRJNA1233465b_S_NODE_318293_length_170_cov_1.578512_g316608_i0 | PRJNA1233465 | 318293 | 170 | 1.578512 | 2.6834704 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 152 | 1.36e-32 | NTclustered | gi|2874253938|emb|OY970263.1| | 412054 | g316608 | i0 | 83.851 | 26.9705882352941 | 161 | 24 | 94 | 2 | 11 | 170 | 1888139 | 1887980 | MAG: uncultured Gemmatimonadales bacterium isolate MFD02416.bin.2.26 genome assembly, chromosome: 1 | blastn | 4585 | 152 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium | |||
| 26164474 | 26164474 | PRJNA1233465b_S_NODE_247565_length_191_cov_1.260563_g245880_i0 | PRJNA1233465 | 247565 | 191 | 1.260563 | 2.40767533 | Gemmatimonadaceae | 219687 | Bacteria | Bacteria | 169 | 1.56e-37 | NTclustered | gi|575456455|gb|CP007128.1| | 861299 | g245880 | i0 | 86.452 | 3.27225130890052 | 155 | 19 | 81 | 2 | 38 | 191 | 5227881 | 5228034 | Gemmatirosa kalamazoonesis strain KBS708, complete genome | blastn | 625 | 169 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | Gemmatimonadaceae | Gemmatirosa | Gemmatirosa kalamazoonensis | |
| 26491003 | 26491003 | PRJNA1233465b_S_NODE_264896_length_185_cov_1.632353_g263211_i0 | PRJNA1233465 | 264896 | 185 | 1.632353 | 3.01985305 | uncultured Gemmatimonadales bacterium | 412054 | Bacteria | Bacteria | 224 | 3.16e-54 | NTclustered | gi|2874253978|emb|OY970303.1| | 412054 | g263211 | i0 | 88.649 | 1 | 185 | 19 | 99 | 2 | 2 | 185 | 7408009 | 7408192 | MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 | blastn | 185 | 224 | 1 | Bacteria | FCB group | Pseudomonadati | Gemmatimonadota | Gemmatimonadia | Gemmatimonadales | uncultured Gemmatimonadales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;