RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 8 ✖

analysis 1

  • blastn · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25670611 25670611 PRJNA1233465a_S_NODE_40770_length_316_cov_138.112360_g39496_i0 PRJNA1233465 40770 316 138.11236 436.4350576 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 54.7 0.008   NTclustered gi|1624757467|ref|XM_029029662.1| 67003 g39496 i0 96.97 0.395569620253165 33 0 10 1 44 75 1404 1372 Trypanosoma theileri uncharacterized protein (TM35_000391460), partial mRNA blastn 125 54.7 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
25829088 25829088 PRJNA1233465f_S_NODE_232323_length_167_cov_1.296610_g230043_i0 PRJNA1233465 232323 167 1.29661 2.1653387 Trypanosoma vivax 5699 Euglenozoa other_Eukaryota 56.5 0.001   NTclustered gi|1918093778|gb|MT090068.1| 5699 g230043 i0 96.97 0.197604790419162 33 1 20 0 101 133 19816 19848 Trypanosoma vivax strain Y486 maxicircle kinetoplast, complete genome blastn 33 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
25966346 25966346 PRJNA1233465f_S_NODE_256292_length_163_cov_0.894737_g254012_i0 PRJNA1233465 256292 163 0.894737 1.45842131 Strombomonas costata 161230 Euglenozoa other_Eukaryota 56.5 0.001   NTclustered gi|2452630341|ref|NC_071865.1| 161230 g254012 i0 94.595 0.226993865030675 37 0 23 2 45 81 137433 137467 Strombomonas costata chloroplast, complete genome blastn 37 56.5 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Strombomonas Strombomonas costata
26086342 26086342 PRJNA1233465d_S_NODE_134989_length_164_cov_0.886957_g133878_i0 PRJNA1233465 134989 164 0.886957 1.45460948 Leishmania sp. Namibia 2802991 Euglenozoa other_Eukaryota 52.8 0.014   NTclustered gi|2794980737|ref|XM_067856291.1| 2802991 g133878 i0 100 0.341463414634146 28 0 17 0 72 99 298 325 Leishmania sp. Namibia uncharacterized protein (JIQ42_08242), partial mRNA blastn 56 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania sp. Namibia
26089976 26089976 PRJNA1233465e_S_NODE_103341_length_190_cov_1.553191_g102031_i0 PRJNA1233465 103341 190 1.553191 2.9510629 Trypanosoma vivax Y486 1055687 Euglenozoa other_Eukaryota 52.8 0.016   NTclustered gi|340056612|emb|HE573026.1| 1055687 g102031 i0 100 0.147368421052632 28 0 15 0 144 171 1239559 1239532 Trypanosoma vivax Y486 annotated genomic contig, chromosome 10 blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
26099097 26099097 PRJNA1233465f_S_NODE_178941_length_186_cov_1.700730_g176661_i0 PRJNA1233465 178941 186 1.70073 3.1633578 Trypanosoma vivax Y486 1055687 Euglenozoa other_Eukaryota 52.8 0.016   NTclustered gi|340056612|emb|HE573026.1| 1055687 g176661 i0 100 0.150537634408602 28 0 15 0 131 158 1239559 1239532 Trypanosoma vivax Y486 annotated genomic contig, chromosome 10 blastn 28 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax
26298796 26298796 PRJNA1233465a_S_NODE_206734_length_171_cov_1.188525_g205460_i0 PRJNA1233465 206734 171 1.188525 2.03237775 root 1 Root_unresolved Root_unresolved 195 2.25e-45   NTclustered gi|24462339|gb|AC090053.5| 5664 g205460 i0 87.5 15.3391812865497 168 21 98 0 3 170 21317 21150 Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence blastn 2623 195 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania major
26357090 26357090 PRJNA1233465b_S_NODE_91511_length_284_cov_3.097872_g89826_i0 PRJNA1233465 91511 284 3.097872 8.79795648 Trypanosoma vivax Y486 1055687 Euglenozoa other_Eukaryota 65.8 3.37e-6   NTclustered gi|340056612|emb|HE573026.1| 1055687 g89826 i0 95.122 9.88380281690141 41 2 14 0 244 284 1035888 1035928 Trypanosoma vivax Y486 annotated genomic contig, chromosome 10 blastn 2807 65.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma vivax

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;