RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Duplornaviricota"

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tax_superkingdom 1

tax_phylum 1

  • Duplornaviricota · 7 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1233465 · 7 ✖

analysis 1

  • blastn · 7 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25756456 25756456 PRJNA1233465b_S_NODE_260362_length_186_cov_1328.233577_g258677_i0 PRJNA1233465 260362 186 1328.233577 2470.51445322 root 1 Root_unresolved Root_unresolved 54.7 0.004   NTclustered gi|2717470344|gb|PP272778.1| 28875 g258677 i0 100 0.311827956989247 29 0 16 0 104 132 3315 3287 MAG: Rotavirus A isolate sedore_2 structural protein VP1 gene, complete cds blastn 58 54.7 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
25758876 25758876 PRJNA1233465e_S_NODE_68394_length_225_cov_3188.829545_g67084_i0 PRJNA1233465 68394 225 3188.829545 7174.86647625 root 1 Root_unresolved Root_unresolved 58.4 4.3e-4   NTclustered gi|2717470344|gb|PP272778.1| 28875 g67084 i0 100 0.275555555555556 31 0 14 0 172 202 3315 3285 MAG: Rotavirus A isolate sedore_2 structural protein VP1 gene, complete cds blastn 62 58.4 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
26302541 26302541 PRJNA1233465e_S_NODE_41094_length_279_cov_10653.439130_g39784_i0 PRJNA1233465 41094 279 10653.43913 29723.0951727 root 1 Root_unresolved Root_unresolved 58.4 5.52e-4   NTclustered gi|2717470344|gb|PP272778.1| 28875 g39784 i0 100 0.222222222222222 31 0 11 0 24 54 3285 3315 MAG: Rotavirus A isolate sedore_2 structural protein VP1 gene, complete cds blastn 62 58.4 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
26438986 26438986 PRJNA1233465e_S_NODE_84255_length_207_cov_0.898734_g82945_i0 PRJNA1233465 84255 207 0.898734 1.86037938 root 1 Root_unresolved Root_unresolved 58.4 3.89e-4   NTclustered gi|2717470344|gb|PP272778.1| 28875 g82945 i0 100 0.314009661835749 31 0 15 0 175 205 3285 3315 MAG: Rotavirus A isolate sedore_2 structural protein VP1 gene, complete cds blastn 65 58.4 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
26440352 26440352 PRJNA1233465f_S_NODE_68911_length_279_cov_42.056522_g66631_i0 PRJNA1233465 68911 279 42.056522 117.33769638 root 1 Root_unresolved Root_unresolved 54.7 0.007   NTclustered gi|2717470344|gb|PP272778.1| 28875 g66631 i0 96.875 0.218637992831541 32 1 11 0 248 279 3283 3314 MAG: Rotavirus A isolate sedore_2 structural protein VP1 gene, complete cds blastn 61 54.7 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis
26487577 26487577 PRJNA1233465a_S_NODE_53832_length_287_cov_2.008403_g52558_i0 PRJNA1233465 53832 287 2.008403 5.76411661 Colorado tick fever virus 46839 Viruses Viruses 276 1.45e-69   NTclustered gi|2758887253|gb|PP473574.1| 46839 g52558 i0 95.93 1.91289198606272 172 3 59 3 119 287 4490 4660 MAG: Colorado tick fever virus isolate HL11 segment 1, complete sequence blastn 549 276 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Spinareoviridae Coltivirus Coltivirus dermacentoris
26570758 26570758 PRJNA1233465a_S_NODE_204504_length_172_cov_0.747967_g203230_i0 PRJNA1233465 204504 172 0.747967 1.28650324 root 1 Root_unresolved Root_unresolved 56.5 0.001   NTclustered gi|2717470344|gb|PP272778.1| 28875 g203230 i0 97.059 0.372093023255814 34 0 19 1 9 41 3315 3282 MAG: Rotavirus A isolate sedore_2 structural protein VP1 gene, complete cds blastn 64 56.5 1 Viruses   Orthornavirae Duplornaviricota Resentoviricetes Reovirales Sedoreoviridae Rotavirus Rotavirus alphagastroenteritidis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;