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contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Ciliophora"

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tax_superkingdom 1

tax_phylum 1

  • Ciliophora · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 11 ✖

analysis 1

  • blastn · 11 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25554798 25554798 PRJNA1233465f_S_NODE_180905_length_185_cov_2.250000_g178625_i0 PRJNA1233465 180905 185 2.25 4.1625 Colpoda steini 63136 SAR_Eukaryotes SAR_Eukaryotes 342 8.369999999999999e-90   NTclustered gi|646281697|gb|KJ607915.1| 63136 g178625 i0 100 99.4486486486486 185 0 100 0 1 185 736 552 Colpoda steinii strain PABBc-29 18S ribosomal RNA gene, partial sequence blastn 18398 342 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda steini
25619753 25619753 PRJNA1233465b_S_NODE_182473_length_217_cov_3.732143_g180788_i0 PRJNA1233465 182473 217 3.732143 8.09875031 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 176 1.09e-39   NTclustered gi|161728|gb|M86723.1|TETATUB 5911 g180788 i0 94.69 4.00921658986175 113 6 52 0 4 116 2621 2733 Tetrahymena thermophila alpha-tubulin gene, complete cds blastn 870 176 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
25758059 25758059 PRJNA1233465d_S_NODE_86674_length_193_cov_2.125000_g85563_i0 PRJNA1233465 86674 193 2.125 4.10125 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 351 1.46e-92   NTclustered gi|1802599797|gb|MT001206.1| 41631 g85563 i0 99.482 99.5336787564767 193 1 100 0 1 193 734 542 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 19210 351 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
25819584 25819584 PRJNA1233465e_S_NODE_146643_length_166_cov_0.871795_g145333_i0 PRJNA1233465 146643 166 0.871795 1.4471797 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 58.4 2.99e-4   NTclustered gi|146171411|ref|XM_001471339.1| 312017 g145333 i0 100 0.186746987951807 31 0 19 0 71 101 291 321 Tetrahymena thermophila SB210 transmembrane protein, putative partial mRNA blastn 31 58.4 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26030738 26030738 PRJNA1233465e_S_NODE_58116_length_242_cov_1.005181_g56806_i0 PRJNA1233465 58116 242 1.005181 2.43253802 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 196 9.52e-46   NTclustered gi|161728|gb|M86723.1|TETATUB 5911 g56806 i0 97.391 44.3553719008264 115 3 48 0 128 242 2733 2619 Tetrahymena thermophila alpha-tubulin gene, complete cds blastn 10734 196 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26032502 26032502 PRJNA1233465f_S_NODE_97308_length_242_cov_1.015544_g95028_i0 PRJNA1233465 97308 242 1.015544 2.45761648 Tetrahymena 5890 SAR_Eukaryotes SAR_Eukaryotes 196 9.52e-46   NTclustered gi|161728|gb|M86723.1|TETATUB 5911 g95028 i0 97.391 44.3553719008264 115 3 48 0 128 242 2733 2619 Tetrahymena thermophila alpha-tubulin gene, complete cds blastn 10734 196 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26075316 26075316 PRJNA1233465a_S_NODE_122957_length_211_cov_2.000000_g121683_i0 PRJNA1233465 122957 211 2 4.22 Cyclidium sp. MMP-2 2021665 SAR_Eukaryotes SAR_Eukaryotes 390 3.459999999999999e-104   NTclustered gi|2009899914|gb|MW785065.1| 2704628 g121683 i0 100 98.4075829383886 211 0 100 0 1 211 111 321 Cyclidium sp. MMP-2020a isolate SM20191018 large subunit ribosomal RNA gene, partial sequence blastn 20764 390 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Cyclidiidae Cyclidium Cyclidium sp. MMP-2020a
26103635 26103635 PRJNA1233465f_S_NODE_42173_length_345_cov_1.398649_g39893_i0 PRJNA1233465 42173 345 1.398649 4.82533905 Tetrahymena thermophila SB21 5911 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.009   NTclustered gi|829099803|ref|XM_001007021.2| 312017 g39893 i0 96.97 0.0956521739130435 33 0 9 1 203 234 862 894 Tetrahymena thermophila SB210 hypothetical protein partial mRNA blastn 33 54.7 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
26166587 26166587 PRJNA1233465e_S_NODE_22221_length_365_cov_1.759494_g20911_i0 PRJNA1233465 22221 365 1.759494 6.4221531 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 614 3.519999999999999e-171   NTclustered gi|1802599797|gb|MT001206.1| 41631 g20911 i0 99.408 92.2191780821918 338 2 93 0 1 338 512 849 Colpoda sp. strain HFCC1227 small subunit ribosomal RNA gene, partial sequence blastn 33660 614 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.
26434703 26434703 PRJNA1233465a_S_NODE_175983_length_183_cov_1.141791_g174709_i0 PRJNA1233465 175983 183 1.141791 2.08947753 Vorticellidae 85904 SAR_Eukaryotes SAR_Eukaryotes 296 6.52e-76   NTclustered gi|1151071387|gb|KX926064.1| 282477 g174709 i0 97.688 94.5355191256831 173 3 94 1 1 172 361 189 Uncultured Peritrichia clone Peri974F_W_31 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 17300 296 1 Eukaryota Sar   Ciliophora Oligohymenophorea       uncultured Peritrichia
26572588 26572588 PRJNA1233465b_S_NODE_329712_length_167_cov_1.728814_g328027_i0 PRJNA1233465 329712 167 1.728814 2.88711938 Colpoda 5979 SAR_Eukaryotes SAR_Eukaryotes 309 7.53e-80   NTclustered gi|1802599794|gb|MT001203.1| 41631 g328027 i0 100 100.119760479042 167 0 100 0 1 167 701 867 Colpoda sp. strain HFCC848 small subunit ribosomal RNA gene, partial sequence blastn 16720 309 1 Eukaryota Sar   Ciliophora Colpodea Colpodida Colpodidae Colpoda Colpoda sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;