RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1233465 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25689009 25689009 PRJNA1233465f_S_NODE_140458_length_206_cov_1.942675_g138178_i0 PRJNA1233465 140458 206 1.942675 4.0019105 uncultured Entophlyctis 1260781 Fungi Fungi 126 1.05e-24   NTclustered gi|511488256|gb|JX898656.1| 1260781 g138178 i0 90.816 39.752427184466 98 4 45 2 1 93 275 372 Uncultured Entophlyctis clone ACV_D09-37 28S ribosomal RNA gene, partial sequence blastn 8189 126 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales Chytriomycetaceae   uncultured Entophlyctis
26489252 26489252 PRJNA1233465b_S_NODE_134072_length_246_cov_3.106599_g132387_i0 PRJNA1233465 134072 246 3.106599 7.64223354 Batrachochytrium dendrobatidis 109871 Fungi Fungi 52.8 0.022   NTclustered gi|2897835648|gb|CP161925.1| 109871 g132387 i0 100 0.113821138211382 28 0 11 0 56 83 354012 353985 Batrachochytrium dendrobatidis strain JEL423 chromosome 3 blastn 28 52.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophydiales   Batrachochytrium Batrachochytrium dendrobatidis
26573208 26573208 PRJNA1233465d_S_NODE_120488_length_169_cov_1.716667_g119377_i0 PRJNA1233465 120488 169 1.716667 2.90116723 Fungi 4751 Fungi Fungi 69.4 1.4e-7   NTclustered gi|166178827|gb|EU379197.1| 64517 g119377 i0 97.5 24.2307692307692 40 1 24 0 130 169 320 281 Rhizophlyctis rosea isolate RT003 28S ribosomal RNA gene, partial sequence blastn 4095 69.4 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Rhizophlyctidales Rhizophlyctidaceae Rhizophlyctis Rhizophlyctis rosea

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;