RNAquarium Metadata Server
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contig_metadata

10 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 10 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1233465 · 10 ✖

analysis 1

  • blastn · 10 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25531197 25531197 PRJNA1233465a_S_NODE_133089_length_205_cov_1.282051_g131815_i0 PRJNA1233465 133089 205 1.282051 2.62820455 Fluviispira sanaruensis 2493639 Bacteria Bacteria 52.8 0.018   NTclustered gi|1566193515|dbj|AP019368.1| 2493639 g131815 i0 100 0.136585365853659 28 0 14 0 40 67 1116180 1116207 Silvanigrellales bacterium RF1110005 DNA, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Oligoflexia Silvanigrellales Silvanigrellaceae Fluviispira Fluviispira sanaruensis
25538427 25538427 PRJNA1233465b_S_NODE_265721_length_185_cov_1.154412_g264036_i0 PRJNA1233465 265721 185 1.154412 2.1356622 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 52.8 0.016   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g264036 i0 96.774 0.167567567567568 31 1 17 0 52 82 1329933 1329963 Bacteriovorax sp. HI3 DNA, complete genome blastn 31 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
25674011 25674011 PRJNA1233465b_S_NODE_237242_length_194_cov_4.096552_g235557_i0 PRJNA1233465 237242 194 4.096552 7.94731088 Bdellovibrio sp. HCB2 28201 Bacteria Bacteria 244 2.57e-60   NTclustered gi|2895998570|gb|CP178618.1| 3394354 g235557 i0 90.71 3.77319587628866 183 17 94 0 12 194 2030324 2030142 Bdellovibrio sp. HCB209 chromosome, complete genome blastn 732 244 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB209
25953079 25953079 PRJNA1233465d_S_NODE_76724_length_203_cov_2.558442_g75613_i0 PRJNA1233465 76724 203 2.558442 5.19363726 Micavibrio aeruginosavorus 349221 Bacteria Bacteria 60.2 1.06e-4   NTclustered gi|1950812799|gb|CP066681.1| 349221 g75613 i0 92.857 0.206896551724138 42 2 21 1 121 162 557394 557434 Micavibrio aeruginosavorus isolate NC_groundwater_70_Ag_B-0.1um_54_66 chromosome blastn 42 60.2 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus
26211541 26211541 PRJNA1233465a_S_NODE_123238_length_211_cov_1.561728_g121964_i0 PRJNA1233465 123238 211 1.561728 3.29524608 Bdellovibrio sp. CKG 28201 Bacteria Bacteria 268 1.6899999999999994e-67   NTclustered gi|2663425168|dbj|AP029173.1| 3113893 g121964 i0 89.573 1 211 22 100 0 1 211 2081821 2082031 Bdellovibrio sp. CKG001 DNA, complete genome blastn 211 268 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. CKG001
26231644 26231644 PRJNA1233465e_S_NODE_95910_length_196_cov_1.387755_g94600_i0 PRJNA1233465 95910 196 1.387755 2.7199998 Bdellovibrio sp. TP 743912 Bacteria Bacteria 56.5 0.001   NTclustered gi|290909000|gb|GQ273740.1| 743912 g94600 i0 100 0.295918367346939 30 0 15 0 165 194 701 672 Bdellovibrio sp. TP 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 58 56.5 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. TP
26348822 26348822 PRJNA1233465a_S_NODE_183239_length_180_cov_1.167939_g181965_i0 PRJNA1233465 183239 180 1.167939 2.1022902 Bdellovibrio sp. HCB2 28201 Bacteria Bacteria 145 2.45e-30   NTclustered gi|2895998570|gb|CP178618.1| 3394354 g181965 i0 82.081 0.961111111111111 173 27 95 4 10 180 3006868 3006698 Bdellovibrio sp. HCB209 chromosome, complete genome blastn 173 145 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB209
26371896 26371896 PRJNA1233465f_S_NODE_198943_length_178_cov_1.565891_g196663_i0 PRJNA1233465 198943 178 1.565891 2.78728598 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 161 2.4e-35   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g196663 i0 83.051 2.95505617977528 177 30 99 0 1 177 3379340 3379164 Bacteriovorax sp. HI3 DNA, complete genome blastn 526 161 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3
26489475 26489475 PRJNA1233465b_S_NODE_150768_length_235_cov_1.903226_g149083_i0 PRJNA1233465 150768 235 1.903226 4.4725811 Bdellovibrio sp. HCB2 28201 Bacteria Bacteria 195 3.31e-45   NTclustered gi|2895998570|gb|CP178618.1| 3394354 g149083 i0 83.256 6.03404255319149 215 32 91 4 4 216 3006794 3006582 Bdellovibrio sp. HCB209 chromosome, complete genome blastn 1418 195 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB209
26493720 26493720 PRJNA1233465d_S_NODE_106312_length_178_cov_1.201550_g105201_i0 PRJNA1233465 106312 178 1.20155 2.138759 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 150 5.19e-32   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g105201 i0 81.921 2.95505617977528 177 32 99 0 1 177 3379340 3379164 Bacteriovorax sp. HI3 DNA, complete genome blastn 526 150 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;