RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26220296 26220296 PRJNA1233465b_S_NODE_369694_length_161_cov_1.696429_g368009_i0 PRJNA1233465 369694 161 1.696429 2.73125069 Odontella sp. (in: diatoms) 40357 SAR_Eukaryotes SAR_Eukaryotes 148 1.6599999999999998e-31   NTclustered gi|1377545700|gb|MG835798.1| 40357 g368009 i0 84.277 2.06211180124224 159 17 98 6 5 161 679 831 Odontella sp. (in: Bacillariophyta) isolate SKLMP_B005 28S ribosomal RNA gene, partial sequence blastn 332 148 1 Eukaryota Sar   Bacillariophyta Mediophyceae Eupodiscales Odontellaceae Odontella Odontella sp. (in: diatoms)
26298663 26298663 PRJNA1233465a_S_NODE_185598_length_179_cov_1.176923_g184324_i0 PRJNA1233465 185598 179 1.176923 2.10669217 Bacillariophyta 2836 SAR_Eukaryotes SAR_Eukaryotes 139 1.13e-28   NTclustered gi|2172620591|ref|NC_059929.1| 671091 g184324 i0 89.908 134.938547486034 109 10 61 1 69 177 12336 12443 Coscinodiscus wailesii chloroplast, complete genome blastn 24154 139 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Coscinodiscales Coscinodiscaceae Coscinodiscus Coscinodiscus wailesii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;