RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_phylum = "Armatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1233465 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25541833 25541833 PRJNA1233465d_S_NODE_127833_length_166_cov_1.273504_g126722_i0 PRJNA1233465 127833 166 1.273504 2.11401664 uncultured Armatimonadaceae bacterium 1579981 Bacteria Bacteria 302 1.2500000000000001e-77   NTclustered gi|1962354638|emb|LR605213.1| 1579981 g126722 i0 99.401 100.518072289157 167 0 100 1 1 166 235 69 uncultured Armatimonadaceae bacterium partial 16S rRNA gene blastn 16686 302 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae   uncultured Armatimonadaceae bacterium
25692264 25692264 PRJNA1233465f_S_NODE_215474_length_172_cov_2.349593_g213194_i0 PRJNA1233465 215474 172 2.349593 4.04129996 uncultured Armatimonadaceae bacterium 1579981 Bacteria Bacteria 313 5.989999999999998e-81   NTclustered gi|1962354638|emb|LR605213.1| 1579981 g213194 i0 99.422 100.843023255814 173 0 100 1 1 172 76 248 uncultured Armatimonadaceae bacterium partial 16S rRNA gene blastn 17345 313 1 Bacteria   Bacillati Armatimonadota Armatimonadia Armatimonadales Armatimonadaceae   uncultured Armatimonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;