RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 3 ✖

bioproject 1

  • PRJNA1233465 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25539377 25539377 PRJNA1233465b_S_NODE_344465_length_165_cov_1.189655_g342780_i0 PRJNA1233465 344465 165 1.189655 1.96293075 Murine leukemia virus 11786 Viruses Viruses 294 2.08e-75   NTclustered gi|21666481|gb|AF395024.1| 11786 g342780 i0 98.788 94.5212121212121 165 2 100 0 1 165 287 123 Murine leukemia virus clone liver-SG(U3), mRNA sequence blastn 15596 294 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
25960478 25960478 PRJNA1233465f_S_NODE_121004_length_220_cov_1.192982_g118724_i0 PRJNA1233465 121004 220 1.192982 2.6245604 Human immunodeficiency virus 1 11676 Viruses Viruses 52.8 0.019   NTclustered gi|344987506|gb|HQ292490.1| 11676 g118724 i0 100 0.127272727272727 28 0 13 0 49 76 750 723 HIV-1 isolate SCIDU347 from China envelope glycoprotein (env) gene, partial cds blastn 28 52.8 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Lentivirus Lentivirus humimdef1
26233053 26233053 PRJNA1233465f_S_NODE_128366_length_214_cov_2.163636_g126086_i0 PRJNA1233465 128366 214 2.163636 4.63018104 Dahlia mosaic virus 213888 Viruses Viruses 265 2.22e-66   NTclustered gi|530721674|gb|KC967481.1| 213888 g126086 i0 92.021 3.47196261682243 188 15 88 0 11 198 2866 2679 Dahlia mosaic virus isolate D10-NZ, complete genome blastn 743 265 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Caulimoviridae Caulimovirus Caulimovirus tessellodahliae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;