RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where analysis = "blastn", bioproject = "PRJNA1233465" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 11 ✖

bioproject 1

  • PRJNA1233465 · 11 ✖

analysis 1

  • blastn · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
25539973 25539973 PRJNA1233465b_S_NODE_47073_length_359_cov_4.538710_g45388_i0 PRJNA1233465 47073 359 4.53871 16.2939689 Tupiella akineta 160070 Plants Plants 54.7 0.009   NTclustered gi|108796875|ref|NC_008114.1| 160070 g45388 i0 87.755 0.136490250696379 49 3 13 2 53 98 81231 81279 Pseudendoclonium akinetum chloroplast, complete genome blastn 49 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Tupiellaceae Tupiella Tupiella akineta
25543671 25543671 PRJNA1233465d_S_NODE_47225_length_249_cov_1.495000_g46114_i0 PRJNA1233465 47225 249 1.495 3.72255 Chlorella variabilis 554065 Plants Plants 52.8 0.023   NTclustered gi|552812280|ref|XM_005843609.1| 554065 g46114 i0 100 0.112449799196787 28 0 11 0 127 154 675 702 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140054) mRNA, complete cds blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
25555787 25555787 PRJNA1233465f_S_NODE_204217_length_176_cov_1.889764_g201937_i0 PRJNA1233465 204217 176 1.889764 3.32598464 Oedogonium cardiacum 55995 Plants Plants 128 2.4e-25   NTclustered gi|6120018|gb|AF183478.1| 55995 g201937 i0 82.237 283.125 152 23 86 4 1 152 2050 1903 Oedogonium cardiacum strain UTEX 40 28S ribosomal RNA gene, partial sequence blastn 49830 128 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Oedogoniales Oedogoniaceae Oedogonium Oedogonium cardiacum
25673868 25673868 PRJNA1233465b_S_NODE_224394_length_199_cov_1.906667_g222709_i0 PRJNA1233465 224394 199 1.906667 3.79426733 Volvox carteri f. nagariensis 3068 Plants Plants 54.7 0.005   NTclustered gi|302832581|ref|XM_002947809.1| 3068 g222709 i0 100 0.14572864321608 29 0 15 0 89 117 814 786 Volvox carteri f. nagariensis uncharacterized protein (VOLCADRAFT_88185), partial mRNA blastn 29 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox carteri
25680178 25680178 PRJNA1233465d_S_NODE_64850_length_218_cov_1.207101_g63739_i0 PRJNA1233465 64850 218 1.207101 2.63148018 Bryopsis sp. HV 3115439 Plants Plants 67.6 6.88e-7   NTclustered gi|1381384260|ref|NC_037363.1| 1979421 g63739 i0 100 1.65596330275229 36 0 17 0 156 191 78374 78409 Bryopsis sp. HV04063 chloroplast, complete genome blastn 361 67.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Bryopsidaceae Bryopsis Bryopsis sp. HV04063
25696856 25696856 PRJNA1233465f_S_NODE_79610_length_263_cov_1.929907_g77330_i0 PRJNA1233465 79610 263 1.929907 5.07565541 Chlorella variabilis 554065 Plants Plants 52.8 0.024   NTclustered gi|552812280|ref|XM_005843609.1| 554065 g77330 i0 100 0.106463878326996 28 0 11 0 85 112 675 702 Chlorella variabilis hypothetical protein (CHLNCDRAFT_140054) mRNA, complete cds blastn 28 52.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella variabilis
26075666 26075666 PRJNA1233465a_S_NODE_13733_length_478_cov_1.951049_g12492_i0 PRJNA1233465 13733 478 1.951049 9.32601422 Kalinella pachyderma 2704665 Plants Plants 60.2 2.78e-4   NTclustered gi|2473928347|ref|NC_072901.1| 2704665 g12492 i0 100 1.37238493723849 32 0 7 0 22 53 266953 266984 Kalinella pachyderma clone 2601 chloroplast, complete genome blastn 656 60.2 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Kalinella Kalinella pachyderma
26234156 26234156 PRJNA1233465f_S_NODE_152814_length_199_cov_1.353333_g150534_i0 PRJNA1233465 152814 199 1.353333 2.69313267 Microspora stagnorum 163317 Plants Plants 315 1.99e-81   NTclustered gi|563940464|ref|NC_022862.1| 163317 g150534 i0 95.876 2.66331658291457 194 8 97 0 1 194 1831 1638 Microspora stagnorum culture-collection SAG:51.86 mitochondrion, complete genome blastn 530 315 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae   Microsporaceae Microspora Microspora stagnorum
26301709 26301709 PRJNA1233465d_S_NODE_50286_length_242_cov_5044.383420_g49175_i0 PRJNA1233465 50286 242 5044.38342 12207.4078764 Eukaryota 2759 Plants Plants 119 2.12e-22   NTclustered gi|167201|gb|M63000.1|CAUUGEAB 3092 g49175 i0 100 26.9297520661157 64 0 26 0 51 114 425 488 Characium hindakii 18S ribosomal RNA gene blastn 6517 119 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Neochloridaceae Characiopodium Characiopodium hindakii
26483377 26483377 PRJNA1233465a_S_NODE_112504_length_219_cov_0.900000_g111230_i0 PRJNA1233465 112504 219 0.9 1.971 Chlamydomonas reinhardtii 3055 Plants Plants 54.7 0.005   NTclustered gi|2082243636|ref|XM_043061489.1| 3055 g111230 i0 100 0.264840182648402 29 0 13 0 151 179 487 515 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_03g205701v5), mRNA blastn 58 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
26486936 26486936 PRJNA1233465a_S_NODE_28752_length_359_cov_3.987097_g27478_i0 PRJNA1233465 28752 359 3.987097 14.31367823 Tupiella akineta 160070 Plants Plants 54.7 0.009   NTclustered gi|108796875|ref|NC_008114.1| 160070 g27478 i0 87.755 0.136490250696379 49 3 13 2 260 305 81279 81231 Pseudendoclonium akinetum chloroplast, complete genome blastn 49 54.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Ulotrichales Tupiellaceae Tupiella Tupiella akineta

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;