RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1228616" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1228616 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7989001 7989001 PRJNA1228616_S_NODE_5747_length_177_cov_2.917910_g5724_i0 PRJNA1228616 5747 177 2.91791 5.1647007 Biomphalaria glabrata 6526 Mollusca Mollusca 60.2 8.94e-5   NTclustered gi|2502134919|ref|XM_056013775.1| 6526 g5724 i0 100 1.03954802259887 32 0 18 0 79 110 233 264 PREDICTED: Biomphalaria glabrata guanine nucleotide-binding protein-like 3 homolog (LOC106077405), transcript variant X5, mRNA blastn 184 60.2 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda   Planorbidae Biomphalaria Biomphalaria glabrata
8700141 8700141 PRJNA1228616_S_NODE_7327_length_161_cov_11.271186_g7304_i0 PRJNA1228616 7327 161 11.271186 18.14660946 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 58.4 2.87e-4   NTclustered gi|2912987826|dbj|AP039592.1| 145626 g7304 i0 100 6.70807453416149 31 0 19 0 105 135 28635091 28635061 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 11, sequence blastn 1080 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
15638502 15638502 PRJNA1228616_S_NODE_2353_length_250_cov_7.033816_g2330_i0 PRJNA1228616 2353 250 7.033816 17.58454 Bradybaena similaris 145626 Mollusca Mollusca 65.8 2.91e-6   NTclustered gi|2912997258|dbj|AP039602.1| 145626 g2330 i0 90 0.32 50 5 20 0 1 50 42177445 42177494 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 21, sequence blastn 80 65.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;