RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1228616" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1228616 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2322446 2322446 PRJNA1228616_S_NODE_4982_length_187_cov_1.916667_g4959_i0 PRJNA1228616 4982 187 1.916667 3.58416729 Cutibacterium 1912216 Bacteria Bacteria 340 3.0499999999999998e-89   NTclustered gi|1446500593|gb|CP031442.1| 1747 g4959 i0 100 279.748663101604 184 0 98 0 1 184 56040 56223 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 52313 340 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
4162601 4162601 PRJNA1228616_S_NODE_3584_length_213_cov_1.658824_g3561_i0 PRJNA1228616 3584 213 1.658824 3.53329512 Corynebacterium tuberculostearicum 38304 Bacteria Bacteria 372 1.27e-98   NTclustered gi|2869842788|gb|CP175780.1| 38304 g3561 i0 98.122 35.9718309859155 213 4 100 0 1 213 1489045 1489257 Corynebacterium tuberculostearicum strain YSMAA1_2_H3 chromosome, complete genome blastn 7662 372 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Corynebacteriaceae Corynebacterium Corynebacterium tuberculostearicum
7425010 7425010 PRJNA1228616_S_NODE_226_length_540_cov_2.722334_g204_i0 PRJNA1228616 226 540 2.722334 14.7006036 Cutibacterium 1912216 Bacteria Bacteria 950 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g204 i0 100 263.47037037037 514 0 95 0 27 540 55439 55952 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 142274 950 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
9975211 9975211 PRJNA1228616_S_NODE_168_length_607_cov_3.216312_g148_i0 PRJNA1228616 168 607 3.216312 19.52301384 Cutibacterium 1912216 Bacteria Bacteria 1122 0   NTclustered gi|1446500593|gb|CP031442.1| 1747 g148 i0 100 272.118616144975 607 0 100 0 1 607 56687 57293 Cutibacterium acnes strain KCOM 1315 chromosome, complete genome blastn 165176 1122 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
13800479 13800479 PRJNA1228616_S_NODE_5791_length_177_cov_0.858209_g5768_i0 PRJNA1228616 5791 177 0.858209 1.51902993 Cutibacterium 1912216 Bacteria Bacteria 279 6.3e-71   NTclustered gi|2548746222|gb|CP129004.1| 1747 g5768 i0 95.429 254.983050847458 175 8 99 0 1 175 609078 608904 Cutibacterium acnes strain EASDk81B chromosome, complete genome blastn 45132 279 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Cutibacterium Cutibacterium acnes
24561759 24561759 PRJNA1228616_S_NODE_5960_length_175_cov_1.068182_g5937_i0 PRJNA1228616 5960 175 1.068182 1.8693185 Lawsonella clevelandensis 1528099 Bacteria Bacteria 302 1.33e-77   NTclustered gi|1723592958|emb|LR584267.1| 1528099 g5937 i0 97.714 266.685714285714 175 4 100 0 1 175 551981 551807 Lawsonella clevelandensis isolate USB-603019 genome assembly, chromosome: 1 blastn 46670 302 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;