RNAquarium Metadata Server
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contig_metadata

1 row where analysis = "blastn", bioproject = "PRJNA1228616" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 1 ✖

bioproject 1

  • PRJNA1228616 · 1 ✖

analysis 1

  • blastn · 1 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19461580 19461580 PRJNA1228616_S_NODE_6216_length_172_cov_0.992248_g6193_i0 PRJNA1228616 6216 172 0.992248 1.70666656 Pestivirus tauri 3052626 Viruses Viruses 291 2.81e-74   NTclustered gi|998226330|gb|KT832820.1| 54315 g6193 i0 97.093 60.953488372093 172 5 100 0 1 172 4238 4409 Bovine viral diarrhea virus 2 strain USMARC-60767, complete genome blastn 10484 291 1 Viruses   Orthornavirae Kitrinoviricota Flasuviricetes Amarillovirales Flaviviridae Pestivirus Pestivirus tauri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;