RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1227535" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2886040 2886040 PRJNA1227535_P_NODE_11263_length_288_cov_1.451163_g11140_i0 PRJNA1227535 11263 288 1.451163 4.17934944 Luteolibacter luteus 2728835 Bacteria Bacteria 200 8.99e-47   NTclustered gi|1835317346|gb|CP051774.1| 2728835 g11140 i0 81.557 10.7777777777778 244 43 84 2 1 243 4046240 4046482 Luteolibacter luteus strain G-1-1-1 chromosome, complete genome blastn 3104 200 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter luteus
9263453 9263453 PRJNA1227535_P_NODE_28428_length_245_cov_0.906977_g28304_i0 PRJNA1227535 28428 245 0.906977 2.22209365 Akkermansia muciniphila 239935 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|1888387165|gb|CP058562.1| 239935 g28304 i0 100 99.1265306122449 245 0 100 0 1 245 2046344 2046588 Akkermansia muciniphila strain AK32 chromosome, complete genome blastn 24286 453 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
19461418 19461418 PRJNA1227535_P_NODE_29696_length_243_cov_1.452941_g29572_i0 PRJNA1227535 29696 243 1.452941 3.53064663 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 204 5.71e-48   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g29572 i0 84.466 95.0123456790123 206 32 85 0 2 207 1875545 1875750 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 23088 204 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;