RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1227535" and tax_phylum = "Thermodesulfobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7988731 7988731 PRJNA1227535_P_NODE_22427_length_252_cov_1.865922_g22303_i0 PRJNA1227535 22427 252 1.865922 4.70212344 Geotalea uraniireducens 351604 Bacteria Bacteria 52.8 0.023   NTclustered gi|146395585|gb|CP000698.1| 351605 g22303 i0 100 0.111111111111111 28 0 11 0 191 218 4716707 4716680 Geobacter uraniireducens Rf4, complete genome blastn 28 52.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens
10539386 10539386 PRJNA1227535_P_NODE_6349_length_312_cov_3.439331_g6226_i0 PRJNA1227535 6349 312 3.439331 10.73071272 Smithellaceae bacterium 2964540 Bacteria Bacteria 65.8 3.75e-6   NTclustered gi|2626216295|emb|OY821638.1| 2964540 g6226 i0 95.122 173.185897435897 41 2 15 0 166 206 3768728 3768768 MAG: Smithellaceae bacterium isolate 7d888188-1d27-4603-a379-950c855845c6 genome assembly, chromosome: 1 blastn 54034 65.8 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Smithellaceae   Smithellaceae bacterium
13089059 13089059 PRJNA1227535_P_NODE_27071_length_246_cov_1.803468_g26947_i0 PRJNA1227535 27071 246 1.803468 4.43653128 Syntrophus buswellii 43774 Bacteria Bacteria 54.7 0.006   NTclustered gi|2869717242|gb|CP175563.1| 43774 g26947 i0 100 0.117886178861789 29 0 12 0 18 46 1282202 1282174 Syntrophus buswellii strain DM-2 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales Syntrophaceae Syntrophus Syntrophus buswellii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;