RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1227535" and tax_phylum = "Rhodothermota"

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tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1227535 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4162355 4162355 PRJNA1227535_P_NODE_24424_length_250_cov_0.881356_g24300_i0 PRJNA1227535 24424 250 0.881356 2.20339 Rhodocaloribacter litoris 2558931 Bacteria Bacteria 237 5.82e-58   NTclustered gi|2076465437|gb|CP076718.1| 2558931 g24300 i0 84.362 73.076 243 36 97 2 3 244 176686 176927 Rhodocaloribacter litoris strain ISCAR-4553 chromosome blastn 18269 237 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodocaloribacter Rhodocaloribacter litoris
23287671 23287671 PRJNA1227535_P_NODE_29279_length_244_cov_0.912281_g29155_i0 PRJNA1227535 29279 244 0.912281 2.22596564 Rubrivirga sp. IMCC43871 3391575 Bacteria Bacteria 176 1.25e-39   NTclustered gi|2890853429|gb|CP177355.1| 3391575 g29155 i0 80.87 0.942622950819672 230 39 94 4 12 240 1963096 1962871 Rubrivirga sp. IMCC43871 chromosome, complete genome blastn 230 176 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae Rubrivirga Rubrivirga sp. IMCC43871

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;