RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1227535" and tax_phylum = "Chloroflexota"

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tax_superkingdom 1

tax_phylum 1

  • Chloroflexota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1227535 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5438499 5438499 PRJNA1227535_P_NODE_20005_length_258_cov_2.481081_g19881_i0 PRJNA1227535 20005 258 2.481081 6.40118898 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 228 3.639999999999999e-55   NTclustered gi|2874253812|emb|OY969796.1| 1672391 g19881 i0 85.973 0.965116279069767 221 22 84 6 28 245 3572095 3571881 MAG: uncultured Chloroflexia bacterium isolate MFD01872.bin.1.103 genome assembly, chromosome: 1 blastn 249 228 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
6149746 6149746 PRJNA1227535_P_NODE_14945_length_275_cov_1.544554_g14822_i0 PRJNA1227535 14945 275 1.544554 4.2475235 Bacteria 2 Bacteria Bacteria 110 1.48e-19   NTclustered gi|2668303330|dbj|AP028460.1| 61435 g14822 i0 79.33 334.305454545455 179 19 100 12 53 223 1281846 1281678 Dehalococcoides mccartyi NIT-OBY DNA, complete genome blastn 91934 111 0.990990990990991 Bacteria   Bacillati Chloroflexota Dehalococcoidia Dehalococcoidales Dehalococcoidaceae Dehalococcoides Dehalococcoides mccartyi
14364328 14364328 PRJNA1227535_P_NODE_23552_length_251_cov_0.876404_g23428_i0 PRJNA1227535 23552 251 0.876404 2.19977404 uncultured Chloroflexia bacterium 1672391 Bacteria Bacteria 274 4.46e-69   NTclustered gi|2874253860|emb|OY969916.1| 1672391 g23428 i0 87.448 76.7290836653386 239 28 95 2 9 246 6150149 6150386 MAG: uncultured Chloroflexia bacterium isolate MFD01916.bin.3.39 genome assembly, chromosome: 1 blastn 19259 274 1 Bacteria   Bacillati Chloroflexota Chloroflexia       uncultured Chloroflexia bacterium
22012254 22012254 PRJNA1227535_P_NODE_8018_length_312_cov_2.351464_g7895_i0 PRJNA1227535 8018 312 2.351464 7.33656768 Dehalococcoidia bacterium 2026734 Bacteria Bacteria 135 2.82e-27   NTclustered gi|2891482139|emb|OZ219872.1| 2026734 g7895 i0 86.29 30.6410256410256 124 17 40 0 166 289 425040 424917 MAG: Dehalococcoidia bacterium isolate adc01b0e-c114-4b94-a05b-fd73c1a39460 genome assembly, chromosome: 6 blastn 9560 135 1 Bacteria   Bacillati Chloroflexota Dehalococcoidia       Dehalococcoidia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;