RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1227535" and tax_clade = "Cyanobacteriota/Melainabacteria group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Cyanobacteriota/Melainabacteria group · 3 ✖

bioproject 1

  • PRJNA1227535 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1046968 1046968 PRJNA1227535_P_NODE_28081_length_245_cov_1.372093_g27957_i0 PRJNA1227535 28081 245 1.372093 3.36162785 Gloeotrichia 92939 Bacteria Bacteria 281 2.59e-71   NTclustered gi|2707826471|gb|CP051186.1| 2723855 g27957 i0 87.347 2 245 31 100 0 1 245 3603968 3603724 MAG: Gloeotrichia echinulata IR180 chromosome, complete genome blastn 490 281 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nostocales Gloeotrichiaceae Gloeotrichia Gloeotrichia echinulata
2886375 2886375 PRJNA1227535_P_NODE_32803_length_229_cov_3.000000_g32679_i0 PRJNA1227535 32803 229 3 6.87 Leptolyngbya sp. 7M 2812896 Bacteria Bacteria 115 2.57e-21   NTclustered gi|2028908486|gb|CP070897.1| 2812896 g32679 i0 89.13 0.40174672489083 92 10 40 0 26 117 2174046 2173955 Leptolyngbya sp. 7M chromosome blastn 92 115 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Leptolyngbyales Leptolyngbyaceae Leptolyngbya Leptolyngbya sp. 7M
6713164 6713164 PRJNA1227535_P_NODE_29906_length_243_cov_0.917647_g29782_i0 PRJNA1227535 29906 243 0.917647 2.22988221 Nodosilinea sp. E11 3037479 Bacteria Bacteria 344 3.23e-90   NTclustered gi|2593238647|gb|CP136520.1| 3037479 g29782 i0 92.5 1.86831275720165 240 18 99 0 4 243 987329 987090 Nodosilinea sp. E11 chromosome blastn 454 344 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Cyanobacteriota Cyanophyceae Nodosilineales Nodosilineaceae Nodosilinea Nodosilinea sp. E11

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;