RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "blastn", bioproject = "PRJNA1227535" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 6 ✖

bioproject 1

  • PRJNA1227535 · 6 ✖

analysis 1

  • blastn · 6 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
335312 335312 PRJNA1227535_P_NODE_23501_length_251_cov_0.876404_g23377_i0 PRJNA1227535 23501 251 0.876404 2.19977404 Candidatus Mycosynbacter amalyticus 2665156 Bacteria Bacteria 156 1.69e-33   NTclustered gi|1799615131|gb|CP045921.1| 2665156 g23377 i0 98.864 44.5338645418327 88 0 35 1 122 209 187064 187150 Candidatus Mycosynbacter amalyticus isolate JR1 chromosome, complete genome blastn 11178 156 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota       Candidatus Mycosynbacter Candidatus Mycosynbacter amalyticus
335492 335492 PRJNA1227535_P_NODE_4201_length_354_cov_2.512456_g4078_i0 PRJNA1227535 4201 354 2.512456 8.89409424 Vermiphilus pyriformis 1763547 Bacteria Bacteria 649 0   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g4078 i0 99.718 126.536723163842 354 1 100 0 1 354 973059 972706 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 44794 649 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis
6712963 6712963 PRJNA1227535_P_NODE_18326_length_264_cov_1.628272_g18202_i0 PRJNA1227535 18326 264 1.628272 4.29863808 Candidatus Saccharibacteria genomosp. TM7-H1 2080739 Bacteria Bacteria 427 3.43e-115   NTclustered gi|1566427536|gb|CP026537.1| 2080739 g18202 i0 95.833 4.17045454545455 264 11 100 0 1 264 263143 263406 Candidatus Saccharibacteria genomosp. TM7-H1 isolate E1 chromosome blastn 1101 427 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria genomosp. TM7-H1
13089096 13089096 PRJNA1227535_P_NODE_2931_length_407_cov_2.718563_g2808_i0 PRJNA1227535 2931 407 2.718563 11.06455141 Vermiphilus pyriformis 1763547 Bacteria Bacteria 741 0   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g2808 i0 99.509 52.4226044226044 407 2 100 0 1 407 974241 974647 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 21336 741 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis
22012263 22012263 PRJNA1227535_P_NODE_8918_length_299_cov_1.969027_g8795_i0 PRJNA1227535 8918 299 1.969027 5.88739073 Candidatus Gottesmanbacteria bacterium 2282145 Bacteria Bacteria 241 5.53e-59   NTclustered gi|2874253727|emb|OY969569.1| 2282145 g8795 i0 81.667 126.491638795987 300 45 99 9 5 299 737919 737625 MAG: Candidatus Gottesmanbacteria bacterium isolate MFD03899.bin.c.1 genome assembly, chromosome: 1 blastn 37821 241 1 Bacteria Bacteria candidate phyla   Candidatus Gottesmaniibacteriota         Candidatus Gottesmanbacteria bacterium
24561285 24561285 PRJNA1227535_P_NODE_1100_length_599_cov_1.726236_g982_i0 PRJNA1227535 1100 599 1.726236 10.34015364 Vermiphilus pyriformis 1763547 Bacteria Bacteria 1107 0   NTclustered gi|2207817285|gb|CP074345.1| 1763547 g982 i0 100 540.212020033389 599 0 100 0 1 599 974284 973686 MAG: Vermiphilus pyriformis isolate TW-EDP1-1 chromosome, complete genome blastn 323587 1107 1 Bacteria Bacteria candidate phyla           Vermiphilus Vermiphilus pyriformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;