RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_phylum = "Verrucomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1226487 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6712784 6712784 PRJNA1226487_P_NODE_68026_length_248_cov_1.760000_g67924_i0 PRJNA1226487 68026 248 1.76 4.3648 Opitutus terrae 107709 Bacteria Bacteria 174 4.59e-39   NTclustered gi|177839040|gb|CP001032.1| 452637 g67924 i0 80.995 45.8225806451613 221 40 89 2 7 226 2261607 2261388 Opitutus terrae PB90-1, complete genome blastn 11364 174 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus terrae
7988389 7988389 PRJNA1226487_P_NODE_54847_length_265_cov_1.604167_g54745_i0 PRJNA1226487 54847 265 1.604167 4.25104255 Opitutus sp. GAS368 1882749 Bacteria Bacteria 337 5.97e-88   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g54745 i0 89.734 1.98490566037736 263 27 99 0 1 263 3731113 3730851 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 526 337 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
14364005 14364005 PRJNA1226487_P_NODE_57992_length_260_cov_1.647059_g57890_i0 PRJNA1226487 57992 260 1.647059 4.2823534 Oleiharenicola sp. Vm1 3398393 Bacteria Bacteria 348 2.7e-91   NTclustered gi|2912653302|gb|CP180537.1| 3398393 g57890 i0 90.769 23.5153846153846 260 24 100 0 1 260 4110017 4110276 Oleiharenicola sp. Vm1 chromosome, complete genome blastn 6114 348 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Oleiharenicola Oleiharenicola sp. Vm1
20736533 20736533 PRJNA1226487_P_NODE_77957_length_241_cov_1.833333_g77855_i0 PRJNA1226487 77957 241 1.833333 4.41833253 Luteolibacter ambystomatis 2824561 Bacteria Bacteria 213 9.4e-51   NTclustered gi|2029343589|gb|CP073100.1| 2824561 g77855 i0 82.573 4.87136929460581 241 42 100 0 1 241 348754 348514 Luteolibacter ambystomatis strain 32A chromosome, complete genome blastn 1174 213 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter ambystomatis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;