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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1226487 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8699838 8699838 PRJNA1226487_P_NODE_50667_length_271_cov_6.151515_g50565_i0 PRJNA1226487 50667 271 6.151515 16.67060565 root 1 Root_unresolved Root_unresolved 501 2.05e-137   NTclustered gi|166046604|emb|CU367721.1| 100861 g50565 i0 100 89.4612546125461 271 0 100 0 1 271 259 529 Aphanomyces euteiches cDNA blastn 24244 501 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
14363900 14363900 PRJNA1226487_P_NODE_3232_length_646_cov_11.668412_g3141_i0 PRJNA1226487 3232 646 11.668412 75.37794152 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 300 2.08e-76   NTclustered gi|325196715|emb|FR827504.1| 890382 g3141 i0 95.238 0.292569659442724 189 9 29 0 87 275 1 189 Albugo laibachii Nc14, genomic contig CONTIG_4671_NC14_v4_189_105 blastn 189 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;