RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1226487 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1609577 1609577 PRJNA1226487_P_NODE_40362_length_288_cov_1.432558_g40260_i0 PRJNA1226487 40362 288 1.432558 4.12576704 Pendulispora brunnea 2905690 Bacteria Bacteria 237 6.85e-58   NTclustered gi|2698055994|gb|CP089982.1| 2905690 g40260 i0 85.652 76.4131944444444 230 27 79 6 3 229 10766964 10766738 Pendulispora brunnea strain MSr12523 chromosome, complete genome blastn 22007 237 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora brunnea
8699835 8699835 PRJNA1226487_P_NODE_43347_length_283_cov_1.466667_g43245_i0 PRJNA1226487 43347 283 1.466667 4.15066761 Sorangium 39643 Bacteria Bacteria 198 3.1699999999999993e-46   NTclustered gi|1566478966|gb|CP012672.1| 56 g43245 i0 84.058 5.62544169611307 207 31 73 2 74 279 10578665 10578460 Sorangium cellulosum strain So ce836 chromosome, complete genome blastn 1592 198 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
23287314 23287314 PRJNA1226487_P_NODE_66739_length_249_cov_1.750000_g66637_i0 PRJNA1226487 66739 249 1.75 4.3575 Cystobacter fuscus 43 Bacteria Bacteria 165 2.77e-36   NTclustered gi|2579656172|gb|CP043491.1| 43 g66637 i0 91.597 29.3775100401606 119 10 48 0 73 191 9373949 9373831 Cystobacter fuscus strain Cbf 10 chromosome, complete genome blastn 7315 165 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;