RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_phylum = "Cnidaria"

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tax_superkingdom 1

tax_phylum 1

  • Cnidaria · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1226487 · 2 ✖

analysis 1

  • blastn · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13088724 13088724 PRJNA1226487_P_NODE_70271_length_247_cov_0.885057_g70169_i0 PRJNA1226487 70271 247 0.885057 2.18609079 Hydra vulgaris 6087 Cnidaria other_Eukaryota 320 5.54e-83   NTclustered gi|2744816743|ref|XM_047280293.2| 6087 g70169 i0 90.244 0.995951417004049 246 23 99 1 2 247 1476 1232 PREDICTED: Hydra vulgaris protein disulfide-isomerase A4 (LOC100204811), mRNA blastn 246 320 1 Eukaryota Opisthokonta Metazoa Cnidaria Hydrozoa Anthoathecata Hydridae Hydra Hydra vulgaris
22723724 22723724 PRJNA1226487_P_NODE_32698_length_308_cov_16.578723_g32596_i0 PRJNA1226487 32698 308 16.578723 51.06246684 Anthozoa 6101 Cnidaria other_Eukaryota 435 2.4400000000000003e-117   NTclustered gi|2751533362|ref|XR_010716805.1| 203993 g32596 i0 92.691 94.5779220779221 301 22 98 0 1 301 302 2 PREDICTED: Pocillopora verrucosa large subunit ribosomal RNA (LOC136279283), rRNA blastn 29130 438 0.993150684931507 Eukaryota Opisthokonta Metazoa Cnidaria Anthozoa Scleractinia Pocilloporidae Pocillopora Pocillopora verrucosa

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;