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contig_metadata

16 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_clade = "Sar"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Sar · 16 ✖

bioproject 1

  • PRJNA1226487 · 16 ✖

analysis 1

  • blastn · 16 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
334845 334845 PRJNA1226487_P_NODE_12721_length_414_cov_2.249267_g12621_i0 PRJNA1226487 12721 414 2.249267 9.31196538 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 327 5.91e-85   NTclustered gi|323690576|gb|GU935635.1| 88167 g12621 i0 98.907 29.6256038647343 183 2 100 0 104 286 2060 1878 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 12265 327 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
334898 334898 PRJNA1226487_P_NODE_33081_length_307_cov_2.786325_g32979_i0 PRJNA1226487 33081 307 2.786325 8.55401775 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 558 1.38e-154   NTclustered gi|53829589|gb|AY582847.1| 289359 g32979 i0 100 82.6938110749186 302 0 98 0 6 307 436 737 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 actin gene, partial cds blastn 25387 558 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
1609709 1609709 PRJNA1226487_P_NODE_73422_length_244_cov_2.385965_g73320_i0 PRJNA1226487 73422 244 2.385965 5.8217546 Chilodonella piscicola 1654720 SAR_Eukaryotes SAR_Eukaryotes 337 5.429999999999998e-88   NTclustered gi|1389430804|gb|MH341632.1| 1654720 g73320 i0 92.083 6.00409836065574 240 17 98 2 1 239 308 70 Chilodonella piscicola strain SC large subunit ribosomal RNA gene, partial sequence blastn 1465 337 1 Eukaryota Sar   Ciliophora Phyllopharyngea Chlamydodontida Chilodonellidae Chilodonella Chilodonella piscicola
2885849 2885849 PRJNA1226487_P_NODE_38383_length_291_cov_11.403670_g38281_i0 PRJNA1226487 38383 291 11.40367 33.1846797 Wilbertia typica 655661 SAR_Eukaryotes SAR_Eukaryotes 95.3 4.42e-15   NTclustered gi|1418575077|gb|MH577585.1| 655661 g38281 i0 90.411 19.9553264604811 73 5 25 2 70 141 112 183 Wilbertia typica isolate PXM100628 small subunit ribosomal RNA gene, partial sequence; mitochondrial blastn 5807 95.3 1 Eukaryota Sar   Ciliophora Oligohymenophorea Pleuronematida Eurystomatellidae Wilbertia Wilbertia typica
4161948 4161948 PRJNA1226487_P_NODE_424_length_1255_cov_3.368866_g380_i0 PRJNA1226487 424 1255 3.368866 42.2792683 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 289359 SAR_Eukaryotes SAR_Eukaryotes 2198 0   NTclustered gi|53829555|gb|AY582830.1| 289359 g380 i0 99.75 96.6286852589641 1199 3 96 0 52 1250 1238 40 Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 ef1a gene, partial cds blastn 121269 2198 1 Eukaryota Sar             Stramenopile sp. ex Nuclearia delicatula CCAP1552/1
5438259 5438259 PRJNA1226487_P_NODE_61705_length_254_cov_10.640884_g61603_i0 PRJNA1226487 61705 254 10.640884 27.02784536 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 455 1.5e-123   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g61603 i0 99.598 1.63779527559055 249 1 98 0 1 249 73226 72978 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 416 455 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
7988408 7988408 PRJNA1226487_P_NODE_58327_length_259_cov_8.989247_g58225_i0 PRJNA1226487 58327 259 8.989247 23.28214973 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 472 1.53e-128   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g58225 i0 100 0.984555984555985 255 0 98 0 1 255 52198 51944 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 255 472 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
8699833 8699833 PRJNA1226487_P_NODE_42027_length_285_cov_1.452830_g41925_i0 PRJNA1226487 42027 285 1.45283 4.1405655 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.026   NTclustered gi|2558939|gb|AF025312.1|AF025312 5911 g41925 i0 96.667 0.645614035087719 30 1 11 0 239 268 2810 2839 Tetrahymena thermophila cytoplasmic dynein heavy chain 1a gene, partial cds blastn 184 52.8 1 Eukaryota Sar   Ciliophora Oligohymenophorea Hymenostomatida Tetrahymenidae Tetrahymena Tetrahymena thermophila
8699838 8699838 PRJNA1226487_P_NODE_50667_length_271_cov_6.151515_g50565_i0 PRJNA1226487 50667 271 6.151515 16.67060565 root 1 Root_unresolved Root_unresolved 501 2.05e-137   NTclustered gi|166046604|emb|CU367721.1| 100861 g50565 i0 100 89.4612546125461 271 0 100 0 1 271 259 529 Aphanomyces euteiches cDNA blastn 24244 501 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
10538750 10538750 PRJNA1226487_P_NODE_1789_length_780_cov_2.504950_g1706_i0 PRJNA1226487 1789 780 2.50495 19.53861 Ochromonas danica 2986 SAR_Eukaryotes SAR_Eukaryotes 470 1.82e-127   NTclustered gi|11465862|ref|NC_002571.1| 2986 g1706 i0 82.353 38.474358974359 544 92 69 3 239 780 5412 4871 Ochromonas danica mitochondrion, complete genome blastn 30010 470 1 Eukaryota Sar     Chrysophyceae Chromulinales Chromulinaceae Ochromonas Ochromonas danica
11813547 11813547 PRJNA1226487_P_NODE_31490_length_312_cov_29.682008_g31388_i0 PRJNA1226487 31490 312 29.682008 92.60786496 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 568 2.3399999999999998e-157   NTclustered gi|2088238071|ref|NC_056910.1| 88167 g31388 i0 100 0.983974358974359 307 0 98 0 1 307 38526 38832 Poterioochromonas malhamensis strain SZCZR2049 plastid, complete genome blastn 307 568 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
14363900 14363900 PRJNA1226487_P_NODE_3232_length_646_cov_11.668412_g3141_i0 PRJNA1226487 3232 646 11.668412 75.37794152 Albugo laibachii 653948 SAR_Eukaryotes SAR_Eukaryotes 300 2.08e-76   NTclustered gi|325196715|emb|FR827504.1| 890382 g3141 i0 95.238 0.292569659442724 189 9 29 0 87 275 1 189 Albugo laibachii Nc14, genomic contig CONTIG_4671_NC14_v4_189_105 blastn 189 300 1 Eukaryota Sar   Oomycota Peronosporomycetes Albuginales Albuginaceae Albugo Albugo laibachii
15074392 15074392 PRJNA1226487_P_NODE_20532_length_357_cov_17.091549_g20430_i0 PRJNA1226487 20532 357 17.091549 61.01682993 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 643 4.379999999999998e-180   NTclustered gi|1409222722|gb|MH536656.1| 88167 g20430 i0 99.715 95.9523809523809 351 1 98 0 7 357 1 351 Poterioochromonas malhamensis strain SAG933-1a small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1 and 5.8S ribosomal RNA gene, complete sequence; and internal transcribed spacer 2, partial sequence blastn 34255 643 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
19461017 19461017 PRJNA1226487_P_NODE_63976_length_251_cov_1.730337_g63874_i0 PRJNA1226487 63976 251 1.730337 4.34314587 Plasmodium yoelii 5861 SAR_Eukaryotes SAR_Eukaryotes 52.8 0.023   NTclustered gi|1270521409|ref|XM_722283.2| 5861 g63874 i0 100 0.111553784860558 28 0 11 0 185 212 281 308 Plasmodium yoelii conserved Plasmodium protein, unknown function (PY17X_1106400), partial mRNA blastn 28 52.8 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium yoelii
20736344 20736344 PRJNA1226487_P_NODE_22977_length_345_cov_3.463235_g22875_i0 PRJNA1226487 22977 345 3.463235 11.94816075 Poterioochromonas malhamensis 88167 SAR_Eukaryotes SAR_Eukaryotes 481 3.51e-131   NTclustered gi|323690576|gb|GU935635.1| 88167 g22875 i0 99.251 90.9159420289855 267 1 100 1 79 345 1904 1639 Poteriochroomonas malhamensis strain SAG 933.1c 28S ribosomal RNA gene, partial sequence blastn 31366 481 1 Eukaryota Sar     Synurophyceae Ochromonadales Ochromonadaceae Poterioochromonas Poterioochromonas malhamensis
22011743 22011743 PRJNA1226487_P_NODE_67258_length_249_cov_0.875000_g67156_i0 PRJNA1226487 67258 249 0.875 2.17875 Kryptoperidinium foliaceum 160619 SAR_Eukaryotes SAR_Eukaryotes 126 1.31e-24   NTclustered gi|54300507|gb|AY713393.1| 160619 g67156 i0 84.328 7.48192771084337 134 16 53 5 25 155 1101 970 Kryptoperidinium foliaceum isolate KfolHSP90_6 heat shock protein 90 gene, partial cds blastn 1863 126 1 Eukaryota Sar     Dinophyceae Peridiniales Kryptoperidiniaceae Kryptoperidinium Kryptoperidinium foliaceum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;