RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA1226487 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7988434 7988434 PRJNA1226487_P_NODE_66107_length_250_cov_0.870056_g66005_i0 PRJNA1226487 66107 250 0.870056 2.17514 Candidatus Saccharibacteria bacterium oral taxon 488 713059 Bacteria Bacteria 379 9.139999999999998e-101   NTclustered gi|1842055981|gb|CP040001.1| 713059 g66005 i0 94 13.208 250 15 100 0 1 250 537157 536908 Candidatus Saccharibacteria bacterium oral taxon 488 strain CM006 chromosome, complete genome blastn 3302 379 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium oral taxon 488
11813579 11813579 PRJNA1226487_P_NODE_42730_length_284_cov_1.459716_g42628_i0 PRJNA1226487 42730 284 1.459716 4.14559344 Candidatus Methylomirabilis oxygeniifera 671143 Bacteria Bacteria 124 5.48e-24   NTclustered gi|258590833|emb|FP565575.1| 671143 g42628 i0 95 23.7253521126761 80 3 28 1 30 109 896091 896169 Candidatus Methylomirabilis oxyfera complete genome blastn 6738 124 1 Bacteria Bacteria candidate phyla   Candidatus Methylomirabilota Candidatus Methylomirabilia Candidatus Methylomirabilales Candidatus Methylomirabilaceae Candidatus Methylomirabilis Candidatus Methylomirabilis oxygeniifera

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;