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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1226487" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1226487 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11813604 11813604 PRJNA1226487_P_NODE_4910_length_559_cov_22.164609_g4817_i0 PRJNA1226487 4910 559 22.164609 123.90016431 Vexillifera fluvialis 1105343 Discosea other_Eukaryota 636 1.1999999999999995e-177   NTclustered gi|354720323|gb|HQ687482.1| 1105343 g4817 i0 87.59 47.4311270125224 556 60 99 8 9 559 3 554 Vexillifera fluvialis strain RR1 small subunit ribosomal RNA gene, partial sequence blastn 26514 636 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Vexilliferidae Vexillifera Vexillifera fluvialis
12525544 12525544 PRJNA1226487_P_NODE_62870_length_253_cov_1.444444_g62768_i0 PRJNA1226487 62870 253 1.444444 3.65444332 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 100 8.08e-17   NTclustered gi|2651357777|gb|PP174294.1| 1078836 g62768 i0 85.294 22.0592885375494 102 10 40 3 148 248 4483 4386 Cryptodifflugia operculata isolate 75 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 5581 100 1 Eukaryota Amoebozoa   Tubulinea Elardia Arcellinida Cryptodifflugiidae Cryptodifflugia Cryptodifflugia operculata
18186504 18186504 PRJNA1226487_P_NODE_47475_length_276_cov_29.625616_g47373_i0 PRJNA1226487 47475 276 29.625616 81.76670016 Entamoeba histolytica 5759 Evosea other_Eukaryota 239 1.82e-58   NTclustered gi|467633|emb|Z29969.1| 5759 g47373 i0 82.971 47.6920289855072 276 36 98 7 1 271 1642 1373 E.histolytica plasmid genes for ribosomal RNA and hemolysins HLY1, HLY5mc1 HLY5mc2 HLY4 blastn 13163 239 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba histolytica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;