RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1218818" and tax_phylum = "Bacillota"

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tax_superkingdom 1

tax_phylum 1

  • Bacillota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1218818 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3596849 3596849 PRJNA1218818_P_NODE_28903_length_241_cov_0.916667_g28836_i0 PRJNA1218818 28903 241 0.916667 2.20916747 Fictibacillus 1329200 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1026250285|gb|CP015378.1| 1221500 g28836 i0 100 959.97510373444 241 0 100 0 1 241 22815 23055 Fictibacillus phosphorivorans strain G25-29, complete genome blastn 231354 446 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Fictibacillaceae Fictibacillus Fictibacillus phosphorivorans
11812457 11812457 PRJNA1218818_P_NODE_25970_length_247_cov_0.885057_g25903_i0 PRJNA1218818 25970 247 0.885057 2.18609079 Staphylococcus pasteuri 45972 Bacteria Bacteria 457 4.05e-124   NTclustered gi|1250045397|gb|CP017463.1| 45972 g25903 i0 100 65.6356275303644 247 0 100 0 1 247 550245 550491 Staphylococcus pasteuri strain JS7 chromosome, complete genome blastn 16212 457 1 Bacteria   Bacillati Bacillota Bacilli Bacillales Staphylococcaceae Staphylococcus Staphylococcus pasteuri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;