RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1218818" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1218818 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
333794 333794 PRJNA1218818_P_NODE_27821_length_243_cov_0.905882_g27754_i0 PRJNA1218818 27821 243 0.905882 2.20129326 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 416 6.739999999999998e-112   NTclustered gi|76574296|gb|DQ139444.1| 171953 g27754 i0 97.531 99.4197530864197 243 6 100 0 1 243 934 692 Uncultured Acidobacteria bacterium clone CAL5 23S ribosomal RNA gene, partial sequence blastn 24159 416 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
4160843 4160843 PRJNA1218818_P_NODE_29404_length_230_cov_2.694268_g29337_i0 PRJNA1218818 29404 230 2.694268 6.1968164 Luteitalea pratensis 1855912 Bacteria Bacteria 326 1.1e-84   NTclustered gi|1016914409|gb|CP015136.1| 1855912 g29337 i0 92.889 155.169565217391 225 14 97 2 1 224 654603 654826 Luteitalea pratensis strain DSM 100886 chromosome, complete genome blastn 35689 326 1 Bacteria   Pseudomonadati Acidobacteriota Vicinamibacteria Vicinamibacterales Vicinamibacteraceae Luteitalea Luteitalea pratensis
10537538 10537538 PRJNA1218818_P_NODE_15809_length_312_cov_1.548117_g15742_i0 PRJNA1218818 15809 312 1.548117 4.83012504 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 416 8.98e-112   NTclustered gi|217038890|gb|EU810980.1| 171953 g15742 i0 91.749 86.8429487179487 303 20 96 5 1 300 302 2 Uncultured Acidobacteria bacterium clone H11-00YKB 23S ribosomal RNA gene, partial sequence blastn 27095 416 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium
22010525 22010525 PRJNA1218818_P_NODE_27678_length_243_cov_1.747059_g27611_i0 PRJNA1218818 27678 243 1.747059 4.24535337 uncultured Acidobacteriota bacterium 171953 Bacteria Bacteria 307 4.23e-79   NTclustered gi|217038899|gb|EU810989.1| 171953 g27611 i0 90.558 122.065843621399 233 21 96 1 1 233 232 1 Uncultured Acidobacteria bacterium clone 01QD9 23S ribosomal RNA gene, partial sequence blastn 29662 307 1 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;