RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1218818" and tax_clade = "Amoebozoa"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 4 ✖

bioproject 1

  • PRJNA1218818 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5436895 5436895 PRJNA1218818_P_NODE_13885_length_331_cov_1.081395_g13818_i0 PRJNA1218818 13885 331 1.081395 3.57941745 Cavenderia fasciculata 261658 Evosea other_Eukaryota 182 3.81e-41   NTclustered gi|470247107|ref|XM_004357209.1| 261658 g13818 i0 80.567 3.31117824773414 247 38 73 9 79 320 257 16 Cavenderia fasciculata 40S ribosomal protein S17 (rps17), partial mRNA blastn 1096 182 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Acytosteliales Cavenderiaceae Cavenderia Cavenderia fasciculata
11249681 11249681 PRJNA1218818_P_NODE_24729_length_250_cov_0.870056_g24662_i0 PRJNA1218818 24729 250 0.870056 2.17514 Dictyostelium 5782 Evosea other_Eukaryota 154 6.03e-33   NTclustered gi|1912394|gb|U49169.1|DDU49169 44689 g24662 i0 78.723 3.3 235 46 93 4 17 249 380 148 Dictyostelium discoideum V-ATPase A subunit (vatA) mRNA, complete cds blastn 825 154 1 Eukaryota Amoebozoa   Evosea Eumycetozoa Dictyosteliales Dictyosteliaceae Dictyostelium Dictyostelium discoideum
18185271 18185271 PRJNA1218818_P_NODE_20055_length_279_cov_1.160194_g19988_i0 PRJNA1218818 20055 279 1.160194 3.23694126 Vannella sp. BEN3V 1215631 Discosea other_Eukaryota 438 1.6899999999999996e-118   NTclustered gi|399764216|gb|JQ271727.1| 1215631 g19988 i0 95.357 98.6702508960574 280 6 99 5 1 277 645 920 Vannella sp. BEN3V 18S ribosomal RNA gene, partial sequence blastn 27529 438 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella sp. BEN3V
19459723 19459723 PRJNA1218818_P_NODE_19436_length_283_cov_1.509524_g19369_i0 PRJNA1218818 19436 283 1.509524 4.27195292 Paramoeba branchiphila 308475 Discosea other_Eukaryota 287 6.58e-73   NTclustered gi|226347442|gb|FJ807261.1| 308475 g19369 i0 85.053 88.3674911660777 281 42 99 0 3 283 636 356 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 25008 287 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;