RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1218816 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
333219 333219 PRJNA1218816_P_NODE_28681_length_380_cov_1.368078_g28248_i0 PRJNA1218816 28681 380 1.368078 5.1986964 Aphanomyces euteiches 100861 SAR_Eukaryotes SAR_Eukaryotes 403 8.68e-108   NTclustered gi|166047767|emb|CU362882.1| 100861 g28248 i0 86.133 97.8473684210526 375 50 98 2 1 374 471 98 Aphanomyces euteiches cDNA blastn 37182 403 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
333449 333449 PRJNA1218816_P_NODE_54101_length_251_cov_0.865169_g53668_i0 PRJNA1218816 54101 251 0.865169 2.17157419 Aphanomyces invadans 157072 SAR_Eukaryotes SAR_Eukaryotes 167 7.789999999999999e-37   NTclustered gi|673017857|ref|XM_008864668.1| 157072 g53668 i0 79.487 3.92430278884462 234 48 93 0 8 241 229 462 Aphanomyces invadans 60S ribosomal protein mRNA blastn 985 167 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces invadans
1607958 1607958 PRJNA1218816_P_NODE_23402_length_439_cov_2.043716_g22969_i0 PRJNA1218816 23402 439 2.043716 8.97191324 Aphanomyces astaci 112090 SAR_Eukaryotes SAR_Eukaryotes 281 4.97e-71   NTclustered gi|698807229|ref|XM_009838342.1| 112090 g22969 i0 80.533 76.9635535307517 375 65 84 4 3 370 68 441 Aphanomyces astaci polyubiquitin mRNA blastn 33787 281 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces astaci
25272438 25272438 PRJNA1218816_P_NODE_37460_length_318_cov_1.885714_g37027_i0 PRJNA1218816 37460 318 1.885714 5.99657052 Oomycota 4762 SAR_Eukaryotes SAR_Eukaryotes 241 5.930000000000001e-59   NTclustered gi|59894163|gb|AY729864.1| 74557 g37027 i0 81.882 100.672955974843 287 50 90 2 3 288 941 1226 Thraustotheca clavata heat shock protein 90 gene, partial cds blastn 32014 241 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Achlyaceae Thraustotheca Thraustotheca clavata

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;