RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_phylum = "Chytridiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1218816 · 5 ✖

analysis 1

  • blastn · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4874394 4874394 PRJNA1218816_P_NODE_52904_length_253_cov_2.522222_g52471_i0 PRJNA1218816 52904 253 2.522222 6.38122166 Nowakowskiella 109880 Fungi Fungi 180 1.01e-40   NTclustered gi|194241380|gb|EU828507.1| 546781 g52471 i0 97.196 40.0553359683794 107 2 42 1 147 253 308 203 Nowakowskiella sp. JH FR 28S large subunit ribosomal RNA gene, partial sequence blastn 10134 180 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Cladochytriales Nowakowskiellaceae Nowakowskiella Nowakowskiella sp. JH FR
5436424 5436424 PRJNA1218816_P_NODE_11725_length_728_cov_1.592366_g11320_i0 PRJNA1218816 11725 728 1.592366 11.59242448 Geranomyces variabilis 109894 Fungi Fungi 257 1.44e-63   NTclustered gi|1866582431|gb|MT730606.1| 109894 g11320 i0 95.625 32.4876373626374 160 7 32 0 253 412 4623 4464 Geranomyces variabilis isolate AF30 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 23651 257 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Geranomyces Geranomyces variabilis
5436537 5436537 PRJNA1218816_P_NODE_32565_length_349_cov_1.097826_g32132_i0 PRJNA1218816 32565 349 1.097826 3.83141274 Fimicolochytrium jonesii 1396493 Fungi Fungi 237 8.48e-58   NTclustered gi|2432064921|ref|XM_053069781.1| 1396493 g32132 i0 82.482 34.1031518624642 274 44 78 4 13 284 525 254 Fimicolochytrium jonesii tubulin, alpha, ubiquitous (EV422DRAFT_521958), mRNA blastn 11902 237 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Powellomycetaceae Fimicolochytrium Fimicolochytrium jonesii
8699330 8699330 PRJNA1218816_P_NODE_64347_length_207_cov_7.477612_g63914_i0 PRJNA1218816 64347 207 7.477612 15.47865684 Fungi 4751 Fungi Fungi 361 2.65e-95   NTclustered gi|6707218|gb|AF164335.1| 109949 g63914 i0 98.068 100.004830917874 207 4 100 0 1 207 1398 1604 Monoblepharella elongata strain BKCR91 18S ribosomal RNA gene, partial sequence blastn 20701 361 1 Eukaryota Opisthokonta Fungi Chytridiomycota Monoblepharidomycetes Monoblepharidales Monoblepharidaceae Monoblepharella Monoblepharella elongata
18184753 18184753 PRJNA1218816_P_NODE_10835_length_773_cov_3.301429_g10437_i0 PRJNA1218816 10835 773 3.301429 25.52004617 Chytridiales sp. 2011832 Fungi Fungi 305 5.39e-78   NTclustered gi|2468791101|gb|OQ702943.1| 2011832 g10437 i0 78.195 22.5316946959896 532 79 69 22 1 530 3945 4441 Chytridiales sp. isolate PSC290 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17417 305 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Chytridiales     Chytridiales sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;