RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_phylum = "Chlorophyta"

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tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1218816 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5436541 5436541 PRJNA1218816_P_NODE_33025_length_345_cov_2.643382_g32592_i0 PRJNA1218816 33025 345 2.643382 9.1196679 Ostreococcus tauri 70448 Plants Plants 219 3.04e-52   NTclustered gi|1275573527|ref|XM_022983366.1| 70448 g32592 i0 79.56 14.3478260869565 318 55 90 6 26 335 961 1276 Ostreococcus tauri S-adenosyl-L-homocysteine hydrolase, conserved site (OT_ostta09g02610), partial mRNA blastn 4950 219 1 Eukaryota   Viridiplantae Chlorophyta Mamiellophyceae Mamiellales Bathycoccaceae Ostreococcus Ostreococcus tauri
6149066 6149066 PRJNA1218816_P_NODE_22365_length_454_cov_2.194226_g21932_i0 PRJNA1218816 22365 454 2.194226 9.96178604 Eukaryota 2759 Plants Plants 204 1.15e-47   NTclustered gi|371782121|emb|HE610153.1| 36892 g21932 i0 94.656 45.5550660792952 131 7 29 0 262 392 3322 3452 Pyramimonas olivacea 18S rRNA gene (partial), 5.8S rRNA gene, 28S rRNA gene (partial), ITS1 and ITS2, strain M1668 blastn 20682 204 1 Eukaryota Pyramimonas subgenus I Viridiplantae Chlorophyta Pyramimonadophyceae Pyramimonadales Pyramimonadaceae Pyramimonas Pyramimonas olivacea
7986841 7986841 PRJNA1218816_P_NODE_48607_length_269_cov_1.229592_g48174_i0 PRJNA1218816 48607 269 1.229592 3.30760248 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082245480|ref|XM_001702139.2| 3055 g48174 i0 92.5 1.08550185873606 40 1 15 2 96 135 1579 1616 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_05g233600v5), mRNA blastn 292 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;