RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_phylum = "Acidobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Acidobacteriota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1218816 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6711043 6711043 PRJNA1218816_P_NODE_22806_length_448_cov_0.992000_g22373_i0 PRJNA1218816 22806 448 0.992 4.44416 Acidobacteriota bacterium 1978231 Bacteria Bacteria 728 0   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g22373 i0 95.991 64.4977678571429 449 17 100 1 1 448 4650045 4649597 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 28895 728 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
19459560 19459560 PRJNA1218816_P_NODE_59256_length_245_cov_0.895349_g58823_i0 PRJNA1218816 59256 245 0.895349 2.19360505 Acidobacteriota bacterium 1978231 Bacteria Bacteria 431 2.4299999999999996e-116   NTclustered gi|1958098837|gb|CP065005.1| 1978231 g58823 i0 98.367 125.873469387755 245 4 100 0 1 245 4651436 4651680 Acidobacteria bacterium isolate Kalu_18-Q3-R12-55_MAXAC.198_cln chromosome, complete genome blastn 30839 431 1 Bacteria   Pseudomonadati Acidobacteriota         Acidobacteriota bacterium
25272451 25272451 PRJNA1218816_P_NODE_48060_length_271_cov_1.277778_g47627_i0 PRJNA1218816 48060 271 1.277778 3.46277838 Bacteria 2 Bacteria Bacteria 195 3.9e-45   NTclustered gi|217038898|gb|EU810988.1| 171953 g47627 i0 79.927 126.424354243542 274 47 99 6 4 271 485 214 Uncultured Acidobacteria bacterium clone 01QD8 23S ribosomal RNA gene, partial sequence blastn 34261 196 0.994897959183674 Bacteria   Pseudomonadati Acidobacteriota         uncultured Acidobacteriota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;