contig_metadata
14 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_kingdom = "Thermotogati"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1608016 | 1608016 | PRJNA1218816_P_NODE_30862_length_361_cov_1.524306_g30429_i0 | PRJNA1218816 | 30862 | 361 | 1.524306 | 5.50274466 | Fretibacterium fastidiosum | 651822 | Bacteria | Bacteria | 514 | 3.63e-141 | NTclustered | gi|2869663113|emb|OZ209244.1| | 651822 | g30429 | i0 | 92.308 | 307.950138504155 | 364 | 24 | 100 | 3 | 1 | 361 | 69234 | 68872 | Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 | blastn | 111170 | 514 | 1 | Bacteria | Thermotogati | Synergistota | Synergistia | Synergistales | Aminobacteriaceae | Fretibacterium | Fretibacterium fastidiosum | ||
| 1608220 | 1608220 | PRJNA1218816_P_NODE_56162_length_248_cov_1.691429_g55729_i0 | PRJNA1218816 | 56162 | 248 | 1.691429 | 4.19474392 | Deinococcus sp. VB142 | 3112952 | Bacteria | Bacteria | 364 | 2.539999999999999e-96 | NTclustered | gi|2706837832|gb|CP149782.1| | 3112952 | g55729 | i0 | 93.145 | 69.7459677419355 | 248 | 17 | 100 | 0 | 1 | 248 | 604843 | 604596 | Deinococcus sp. VB142 chromosome 1, complete sequence | blastn | 17297 | 364 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. VB142 | ||
| 2321597 | 2321597 | PRJNA1218816_P_NODE_49542_length_265_cov_2.005208_g49109_i0 | PRJNA1218816 | 49542 | 265 | 2.005208 | 5.3138012 | root | 1 | Root_unresolved | Root_unresolved | 490 | 4.3299999999999986e-134 | NTclustered | gi|1073549716|gb|KX946495.1| | 47478 | g49109 | i0 | 100 | 107.520754716981 | 265 | 0 | 100 | 0 | 1 | 265 | 773 | 509 | Deinococcus sp. strain FX4 16S ribosomal RNA gene, partial sequence | blastn | 28493 | 490 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus sp. | ||
| 4874363 | 4874363 | PRJNA1218816_P_NODE_29104_length_376_cov_0.891089_g28671_i0 | PRJNA1218816 | 29104 | 376 | 0.891089 | 3.35049464 | Deinococcus | 1298 | Bacteria | Bacteria | 398 | 3.989999999999999e-106 | NTclustered | gi|470487735|ref|NR_076834.1| | 309887 | g28671 | i0 | 86.133 | 910.566489361702 | 375 | 45 | 99 | 5 | 1 | 371 | 1328 | 957 | Deinococcus maricopensis strain LB-34 23S ribosomal RNA gene, complete sequence | blastn | 342373 | 398 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus maricopensis | ||
| 5436675 | 5436675 | PRJNA1218816_P_NODE_49365_length_266_cov_1.492228_g48932_i0 | PRJNA1218816 | 49365 | 266 | 1.492228 | 3.96932648 | Fretibacterium fastidiosum | 651822 | Bacteria | Bacteria | 370 | 5.91e-98 | NTclustered | gi|2869663113|emb|OZ209244.1| | 651822 | g48932 | i0 | 91.791 | 439.172932330827 | 268 | 18 | 100 | 2 | 1 | 266 | 67866 | 68131 | Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 | blastn | 116820 | 370 | 1 | Bacteria | Thermotogati | Synergistota | Synergistia | Synergistales | Aminobacteriaceae | Fretibacterium | Fretibacterium fastidiosum | ||
| 6149098 | 6149098 | PRJNA1218816_P_NODE_48365_length_270_cov_1.147208_g47932_i0 | PRJNA1218816 | 48365 | 270 | 1.147208 | 3.0974616 | Deinococcus | 1298 | Bacteria | Bacteria | 122 | 1.86e-23 | NTclustered | gi|379998737|gb|CP002191.1| | 745776 | g47932 | i0 | 80 | 13.3962962962963 | 175 | 28 | 64 | 6 | 95 | 267 | 2355439 | 2355608 | Deinococcus gobiensis I-0, complete genome | blastn | 3617 | 122 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus gobiensis | ||
| 9261252 | 9261252 | PRJNA1218816_P_NODE_2748_length_1766_cov_5.076196_g2595_i0 | PRJNA1218816 | 2748 | 1766 | 5.076196 | 89.64562136 | Deinococcus ficus | 317577 | Bacteria | Bacteria | 2438 | 0 | NTclustered | gi|1220362168|gb|CP021081.1| | 317577 | g2595 | i0 | 91.653 | 317.320498301246 | 1785 | 114 | 100 | 30 | 1 | 1766 | 2341228 | 2342996 | Deinococcus ficus strain CC-FR2-10, complete genome | blastn | 560388 | 2438 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus ficus | ||
| 10537366 | 10537366 | PRJNA1218816_P_NODE_55049_length_250_cov_0.870056_g54616_i0 | PRJNA1218816 | 55049 | 250 | 0.870056 | 2.17514 | Deinococcus geothermalis | 68909 | Bacteria | Bacteria | 401 | 1.9499999999999994e-107 | NTclustered | gi|94554390|gb|CP000359.1| | 319795 | g54616 | i0 | 95.6 | 2.544 | 250 | 11 | 100 | 0 | 1 | 250 | 2385265 | 2385514 | Deinococcus geothermalis DSM 11300, complete genome | blastn | 636 | 401 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis | ||
| 12524968 | 12524968 | PRJNA1218816_P_NODE_58390_length_246_cov_0.890173_g57957_i0 | PRJNA1218816 | 58390 | 246 | 0.890173 | 2.18982558 | Deinococcus | 1298 | Bacteria | Bacteria | 196 | 9.7e-46 | NTclustered | gi|730601855|gb|CP010028.1| | 57497 | g57957 | i0 | 85.417 | 1.5609756097561 | 192 | 25 | 77 | 3 | 57 | 246 | 1010281 | 1010091 | Deinococcus swuensis strain DY59, complete genome | blastn | 384 | 196 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus radiopugnans | ||
| 16910589 | 16910589 | PRJNA1218816_P_NODE_49714_length_265_cov_1.083333_g49281_i0 | PRJNA1218816 | 49714 | 265 | 1.083333 | 2.87083245 | Deinococcus geothermalis | 68909 | Bacteria | Bacteria | 379 | 9.78e-101 | NTclustered | gi|94554390|gb|CP000359.1| | 319795 | g49281 | i0 | 92.481 | 189.943396226415 | 266 | 18 | 100 | 2 | 1 | 265 | 326143 | 326407 | Deinococcus geothermalis DSM 11300, complete genome | blastn | 50335 | 379 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus geothermalis | ||
| 19459586 | 19459586 | PRJNA1218816_P_NODE_63056_length_241_cov_0.916667_g62623_i0 | PRJNA1218816 | 63056 | 241 | 0.916667 | 2.20916747 | Deinococcus taeanensis | 2737050 | Bacteria | Bacteria | 167 | 7.429999999999999e-37 | NTclustered | gi|2105695065|gb|CP083457.1| | 2737050 | g62623 | i0 | 79.583 | 32.0954356846473 | 240 | 43 | 98 | 5 | 5 | 241 | 12278 | 12042 | Deinococcus taeanensis strain TS293 plasmid p_TS293_3, complete sequence | blastn | 7735 | 167 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus taeanensis | ||
| 20735017 | 20735017 | PRJNA1218816_P_NODE_61157_length_243_cov_0.905882_g60724_i0 | PRJNA1218816 | 61157 | 243 | 0.905882 | 2.20129326 | Trueperaceae bacterium | 2026798 | Bacteria | Bacteria | 350 | 6.94e-92 | NTclustered | gi|2621701816|emb|OY759346.1| | 2026798 | g60724 | i0 | 93.939 | 427.427983539095 | 231 | 14 | 95 | 0 | 12 | 242 | 3600638 | 3600868 | MAG: Trueperaceae bacterium isolate dd143a13-9bf8-4812-ba0e-a3cf349d91ff genome assembly, chromosome: 1 | blastn | 103865 | 350 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Trueperales | Trueperaceae | Trueperaceae bacterium | |||
| 22723185 | 22723185 | PRJNA1218816_P_NODE_50458_length_262_cov_1.544974_g50025_i0 | PRJNA1218816 | 50458 | 262 | 1.544974 | 4.04783188 | Deinococcus | 1298 | Bacteria | Bacteria | 390 | 4.4599999999999996e-104 | NTclustered | gi|1435316362|gb|CP031158.1| | 980427 | g50025 | i0 | 94.841 | 198.778625954198 | 252 | 10 | 96 | 2 | 1 | 252 | 1793623 | 1793375 | Deinococcus wulumuqiensis strain NEB 479 chromosome, complete genome | blastn | 52080 | 390 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus wulumuqiensis | ||
| 25272487 | 25272487 | PRJNA1218816_P_NODE_62220_length_242_cov_0.911243_g61787_i0 | PRJNA1218816 | 62220 | 242 | 0.911243 | 2.20520806 | Deinococcus | 1298 | Bacteria | Bacteria | 364 | 2.4699999999999992e-96 | NTclustered | gi|2264081587|gb|CP094462.1| | 1299 | g61787 | i0 | 93.827 | 96.0123966942149 | 243 | 13 | 100 | 2 | 1 | 242 | 2118807 | 2119048 | Deinococcus radiodurans strain BRD125 chromosome 1, complete sequence | blastn | 23235 | 364 | 1 | Bacteria | Thermotogati | Deinococcota | Deinococci | Deinococcales | Deinococcaceae | Deinococcus | Deinococcus radiodurans |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;