RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1607957 1607957 PRJNA1218816_P_NODE_23142_length_443_cov_1.137838_g22709_i0 PRJNA1218816 23142 443 1.137838 5.04062234 uncultured delta proteobacterium HF0010_01J10 710820 Bacteria Bacteria 577 5.72e-160   NTclustered gi|297180392|gb|GU474842.1| 710820 g22709 i0 90.112 226.765237020316 445 42 100 2 1 443 12852 12408 Uncultured delta proteobacterium HF0010_01J10 genomic sequence blastn 100457 577 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium HF0010_01J10
20172545 20172545 PRJNA1218816_P_NODE_15196_length_600_cov_10.136622_g14771_i0 PRJNA1218816 15196 600 10.136622 60.819732 Bacteria 2 Bacteria Bacteria 65.8 7.63e-6   NTclustered gi|618731234|emb|HE803860.1| 34034 g14771 i0 91.489 0.156666666666667 47 4 8 0 286 332 1346 1300 Uncultured delta proteobacterium partial 16S rRNA gene, isolate 1.2, clone 2 blastn 94 65.8 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;