RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_clade = "Apusozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_clade 1

  • Apusozoa · 2 ✖

bioproject 1

  • PRJNA1218816 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9261413 9261413 PRJNA1218816_P_NODE_47208_length_274_cov_1.930348_g46775_i0 PRJNA1218816 47208 274 1.930348 5.28915352 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 126 1.4599999999999999e-24   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g46775 i0 92.135 31.3175182481752 89 7 32 0 186 274 6597 6509 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 8581 126 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae
22010000 22010000 PRJNA1218816_P_NODE_29358_length_373_cov_3.016667_g28925_i0 PRJNA1218816 29358 373 3.016667 11.25216791 Cavaliersmithia chaoae 3003318 Root_unresolved Root_unresolved 233 1.1799999999999998e-56   NTclustered gi|2206682172|gb|OM966645.1| 3003318 g28925 i0 90.449 46.828418230563 178 16 48 1 196 373 6608 6432 Cavaliersmithia chaoae strain FABANU small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 17467 233 1 Eukaryota Apusozoa       Apusomonadida Apusomonadidae Cavaliersmithia Cavaliersmithia chaoae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;