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contig_metadata

12 rows where analysis = "blastn", bioproject = "PRJNA1218816" and tax_clade = "Amoebozoa"

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tax_phylum 3

tax_superkingdom 1

tax_clade 1

  • Amoebozoa · 12 ✖

bioproject 1

  • PRJNA1218816 · 12 ✖

analysis 1

  • blastn · 12 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
333186 333186 PRJNA1218816_P_NODE_24701_length_422_cov_1.684814_g24268_i0 PRJNA1218816 24701 422 1.684814 7.10991508 Korotnevella jeppesenii 1678066 Discosea other_Eukaryota 754 0   NTclustered gi|861553739|gb|KP719185.1| 1678066 g24268 i0 98.815 84.6184834123223 422 5 100 0 1 422 1402 1823 Korotnevella jeppesenii strain A1JEPDK small subunit ribosomal RNA gene, partial sequence blastn 35709 754 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Korotnevella Korotnevella jeppesenii
333263 333263 PRJNA1218816_P_NODE_35021_length_332_cov_1.837838_g34588_i0 PRJNA1218816 35021 332 1.837838 6.10162216 Ripella tribonemae 2047823 Discosea other_Eukaryota 497 3.34e-136   NTclustered gi|1269228454|gb|MF683579.1| 2047823 g34588 i0 93.769 100.560240963855 337 11 100 7 1 332 1308 1639 Ripella tribonemae clone 70.1.14 18S ribosomal RNA gene, partial sequence blastn 33386 497 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella tribonemae
1608237 1608237 PRJNA1218816_P_NODE_58002_length_246_cov_1.520231_g57569_i0 PRJNA1218816 58002 246 1.520231 3.73976826 Dermamoebida sp. 2959661 Discosea other_Eukaryota 211 3.46e-50   NTclustered gi|2270840643|gb|ON979785.1| 2959661 g57569 i0 89.08 43.5934959349593 174 13 69 6 77 246 427 598 Dermamoebida sp. strain 1 small subunit ribosomal RNA gene, partial sequence blastn 10724 211 1 Eukaryota Amoebozoa   Discosea   Longamoebia     Dermamoebida sp.
4160315 4160315 PRJNA1218816_P_NODE_33064_length_345_cov_1.705882_g32631_i0 PRJNA1218816 33064 345 1.705882 5.8852929 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 595 1.1999999999999999e-165   NTclustered gi|300078498|gb|GU001160.1| 5755 g32631 i0 97.971 18.231884057971 345 3 100 3 1 345 5401 5741 Acanthamoeba castellanii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 6290 595 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
5436450 5436450 PRJNA1218816_P_NODE_16745_length_559_cov_3.773663_g16318_i0 PRJNA1218816 16745 559 3.773663 21.09477617 Ripella sp. 805 1217113 Discosea other_Eukaryota 848 0   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g16318 i0 94.434 99.5348837209302 557 21 99 7 1 554 550 1 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 55640 848 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
5436493 5436493 PRJNA1218816_P_NODE_25105_length_417_cov_1.851744_g24672_i0 PRJNA1218816 25105 417 1.851744 7.72177248 Paramoeba branchiphila 308475 Discosea other_Eukaryota 492 1.9899999999999998e-134   NTclustered gi|226347442|gb|FJ807261.1| 308475 g24672 i0 88.01 95.8968824940048 417 49 100 1 1 417 1134 719 Neoparamoeba branchiphila strain AMOP1 elongation factor 1 alpha gene, partial cds blastn 39989 492 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba branchiphila
10537164 10537164 PRJNA1218816_P_NODE_33329_length_343_cov_2.018519_g32896_i0 PRJNA1218816 33329 343 2.018519 6.92352017 Entamoeba dispar 46681 Evosea other_Eukaryota 254 8.28e-63   NTclustered gi|167388768|ref|XM_001738637.1| 370354 g32896 i0 80.46 34.8046647230321 348 55 99 12 2 343 602 942 Entamoeba dispar SAW760 26S protease regulatory subunit 6A, putative (EDI_316920), partial mRNA blastn 11938 254 1 Eukaryota Amoebozoa   Evosea   Mastigamoebida Entamoebidae Entamoeba Entamoeba dispar
12524934 12524934 PRJNA1218816_P_NODE_44730_length_284_cov_2.213270_g44297_i0 PRJNA1218816 44730 284 2.21327 6.2856868 Ripella 1217112 Discosea other_Eukaryota 185 2.4799999999999993e-42   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g44297 i0 84.343 69.1549295774648 198 21 68 8 93 284 1353 1160 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 19640 185 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
13087320 13087320 PRJNA1218816_P_NODE_64251_length_221_cov_4.229730_g63818_i0 PRJNA1218816 64251 221 4.22973 9.3477033 uncultured Amoebozoa 590481 Root_unresolved Root_unresolved 154 5.22e-33   NTclustered gi|221185864|gb|FJ577811.1| 590481 g63818 i0 88.06 41.6018099547511 134 10 60 5 1 132 1227 1098 Uncultured Amoebozoa clone Ivry07 18S ribosomal RNA gene, partial sequence blastn 9194 154 1 Eukaryota Amoebozoa             uncultured Amoebozoa
15636195 15636195 PRJNA1218816_P_NODE_25613_length_411_cov_2.813609_g25180_i0 PRJNA1218816 25613 411 2.813609 11.56393299 Ripella decalvata 2047822 Discosea other_Eukaryota 617 3.0999999999999997e-172   NTclustered gi|1269228437|gb|MF683562.1| 2047822 g25180 i0 93.961 100.885644768856 414 15 100 6 1 411 971 565 Ripella decalvata clone 15101 18S ribosomal RNA gene, partial sequence blastn 41464 617 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella decalvata
20735033 20735033 PRJNA1218816_P_NODE_62897_length_241_cov_0.916667_g62464_i0 PRJNA1218816 62897 241 0.916667 2.20916747 Vannella septentrionalis 197531 Discosea other_Eukaryota 396 8.7e-106   NTclustered gi|300078499|gb|GU001161.1| 197531 g62464 i0 96.266 32.5726141078838 241 9 100 0 1 241 1134 894 Vannella septentrionalis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 7850 396 1 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Vannella Vannella septentrionalis
24559590 24559590 PRJNA1218816_P_NODE_46500_length_277_cov_1.671569_g46067_i0 PRJNA1218816 46500 277 1.671569 4.63024613 Copromyxa sp. PKD 2011 1215977 Tubulinea other_Eukaryota 512 9.73e-141   NTclustered gi|399764167|gb|JQ271678.1| 1215977 g46067 i0 100 56.6714801444043 277 0 100 0 1 277 584 860 Copromyxa sp. PKD 2011 strain ZEB1 18S ribosomal RNA gene, partial sequence blastn 15698 512 1 Eukaryota Amoebozoa   Tubulinea Elardia Euamoebida Hartmannellidae Copromyxa Copromyxa sp. PKD 2011

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;