RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1215813" and tax_phylum = "Mollusca"

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tax_superkingdom 1

tax_phylum 1

  • Mollusca · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1215813 · 4 ✖

analysis 1

  • blastn · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9259781 9259781 PRJNA1215813_P_NODE_7408_length_288_cov_1.451163_g7328_i0 PRJNA1215813 7408 288 1.451163 4.17934944 Haliotis rubra 36100 Mollusca Mollusca 63.9 1.23e-5   NTclustered gi|2194141729|ref|XR_006901850.1| 36100 g7328 i0 93.182 0.152777777777778 44 2 15 1 111 153 281 324 PREDICTED: Haliotis rubra uncharacterized LOC124290192 (LOC124290192), ncRNA blastn 44 63.9 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Lepetellida Haliotidae Haliotis Haliotis rubra
10535589 10535589 PRJNA1215813_P_NODE_2889_length_444_cov_10.784367_g2809_i0 PRJNA1215813 2889 444 10.784367 47.88258948 Mizuhopecten yessoensis 6573 Mollusca Mollusca 52.8 0.043   NTclustered gi|1207953555|ref|XM_021511204.1| 6573 g2809 i0 100 0.0630630630630631 28 0 6 0 190 217 3261 3288 PREDICTED: Mizuhopecten yessoensis uncharacterized LOC110459108 (LOC110459108), mRNA blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Bivalvia Pectinida Pectinidae Mizuhopecten Mizuhopecten yessoensis
16908963 16908963 PRJNA1215813_P_NODE_7694_length_283_cov_1.485714_g7614_i0 PRJNA1215813 7694 283 1.485714 4.20457062 Bradybaena similaris 145626 Mollusca Mollusca 58.4 5.61e-4   NTclustered gi|2912995509|dbj|AP039600.1| 145626 g7614 i0 97.059 11.9010600706714 34 1 13 0 210 243 22237689 22237722 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 19, sequence blastn 3368 58.4 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris
23283998 23283998 PRJNA1215813_P_NODE_7539_length_286_cov_1.380282_g7459_i0 PRJNA1215813 7539 286 1.380282 3.94760652 Bradybaena similaris 145626 Mollusca Mollusca 52.8 0.026   NTclustered gi|2913001816|dbj|AP039609.1| 145626 g7459 i0 100 0.0979020979020979 28 0 10 0 160 187 52019067 52019094 Bradybaena similaris mixture of YIPCMo001421 and YIPCMo001540 DNA, chromosome 28, sequence blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Mollusca Gastropoda Stylommatophora Camaenidae Bradybaena Bradybaena similaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;