RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1215813" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1215813 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15634619 15634619 PRJNA1215813_P_NODE_10193_length_250_cov_0.881356_g10113_i0 PRJNA1215813 10193 250 0.881356 2.20339 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 396 9.079999999999996e-106   NTclustered gi|290987207|ref|XM_002676269.1| 5762 g10113 i0 95.582 2.7 249 8 99 2 1 249 120 365 Naegleria gruberi S25 ribosomal protein (NAEGRDRAFT_80070), mRNA blastn 675 396 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
24557982 24557982 PRJNA1215813_P_NODE_6940_length_297_cov_1.392857_g6860_i0 PRJNA1215813 6940 297 1.392857 4.13678529 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 231 3.2999999999999994e-56   NTclustered gi|2119414045|ref|XM_044693276.1| 51637 g6860 i0 85.022 104.79797979798 227 34 76 0 9 235 1 227 Naegleria lovaniensis uncharacterized protein (C9374_003717), partial mRNA blastn 31125 231 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;