RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1215813" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA1215813 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1045789 1045789 PRJNA1215813_P_NODE_10881_length_248_cov_0.891429_g10801_i0 PRJNA1215813 10881 248 0.891429 2.21074392 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 62.1 3.73e-5   NTclustered gi|915127368|ref|XM_013479100.1| 5804 g10801 i0 93.023 13.0524193548387 43 2 17 1 3 44 313 355 Eimeria maxima elongation factor 1-alpha, putative partial mRNA blastn 3237 62.1 1 Eukaryota Sar   Apicomplexa Conoidasida Eucoccidiorida Eimeriidae Eimeria Eimeria maxima
15634692 15634692 PRJNA1215813_P_NODE_333_length_1129_cov_4.814394_g292_i0 PRJNA1215813 333 1129 4.814394 54.35450826 Rhytidocystis dobrovolskiji 2719951 SAR_Eukaryotes SAR_Eukaryotes 213 4.98e-50   NTclustered gi|1823682786|gb|MT231947.1| 2719951 g292 i0 84.581 12.3215234720992 227 22 20 7 753 978 3525 3311 Rhytidocystis dobrovolskiji isolate OL_MBS2015 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 13911 213 1 Eukaryota Sar   Apicomplexa Marosporida Agamococcidiorida Rhytidocystidae Rhytidocystis Rhytidocystis dobrovolskiji

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;