RNAquarium Metadata Server
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contig_metadata

7 rows where analysis = "blastn", bioproject = "PRJNA1215813" and tax_clade = "core chlorophytes"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 7 ✖

bioproject 1

  • PRJNA1215813 · 7 ✖

analysis 1

  • blastn · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
331695 331695 PRJNA1215813_P_NODE_5581_length_329_cov_0.972656_g5501_i0 PRJNA1215813 5581 329 0.972656 3.20003824 Chlamydomonas reinhardtii 3055 Plants Plants 291 6.03e-74   NTclustered gi|2082247365|ref|XM_043062922.1| 3055 g5501 i0 84.564 93.5987841945289 298 40 90 5 1 295 1883 1589 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_06g269950v5), mRNA blastn 30794 291 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
1606553 1606553 PRJNA1215813_P_NODE_6182_length_314_cov_1.082988_g6102_i0 PRJNA1215813 6182 314 1.082988 3.40058232 Chlamydomonas reinhardtii 3055 Plants Plants 56.5 0.002   NTclustered gi|2082261417|ref|XM_043068617.1| 3055 g6102 i0 100 0.184713375796178 30 0 10 0 133 162 637 608 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_12g534300v5), mRNA blastn 58 56.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii
1606564 1606564 PRJNA1215813_P_NODE_7442_length_287_cov_2.186916_g7362_i0 PRJNA1215813 7442 287 2.186916 6.27644892 Auxenochlorella protothecoides 3075 Plants Plants 163 1.18e-35   NTclustered gi|760448344|ref|XM_011402939.1| 3075 g7362 i0 77.695 68.8606271777004 269 58 93 2 6 273 1 268 Auxenochlorella protothecoides 60S ribosomal protein L15 partial mRNA blastn 19763 163 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella protothecoides
7985247 7985247 PRJNA1215813_P_NODE_9367_length_253_cov_0.866667_g9287_i0 PRJNA1215813 9367 253 0.866667 2.19266751 Coccomyxa subellipsoidea 248742 Plants Plants 198 2.7899999999999998e-46   NTclustered gi|545360614|ref|XM_005645617.1| 574566 g9287 i0 84.135 39.3557312252964 208 29 81 4 48 253 1776 1571 Coccomyxa subellipsoidea C-169 EMP/nonaspanin domain family protein partial mRNA blastn 9957 198 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
10535591 10535591 PRJNA1215813_P_NODE_3009_length_436_cov_1.837466_g2929_i0 PRJNA1215813 3009 436 1.837466 8.01135176 Trebouxia sp. SL0000003 3350044 Plants Plants 58.4 0.001   NTclustered gi|2917929622|emb|OZ234910.1| 3350044 g2929 i0 97.143 2.66284403669725 35 0 8 1 207 241 1793428 1793461 Trebouxia sp. SL0000003 genome assembly, chromosome: 5 blastn 1161 58.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
11249158 11249158 PRJNA1215813_P_NODE_2129_length_508_cov_47.002299_g2049_i0 PRJNA1215813 2129 508 47.002299 238.77167892 Eukaryota 2759 Plants Plants 918 0   NTclustered gi|1201359271|gb|MF040793.1| 3078 g2049 i0 99.407 101.972440944882 506 3 99 0 3 508 1886 1381 Auxenochlorella pyrenoidosa isolate HITH6 18S ribosomal RNA gene, partial sequence blastn 51802 922 0.995661605206074 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Auxenochlorella Auxenochlorella pyrenoidosa
13085480 13085480 PRJNA1215813_P_NODE_8011_length_277_cov_1.877451_g7931_i0 PRJNA1215813 8011 277 1.877451 5.20053927 Chlamydomonas reinhardtii 3055 Plants Plants 219 2.3699999999999998e-52   NTclustered gi|2082240937|ref|XM_043060180.1| 3055 g7931 i0 80.866 92.884476534296 277 53 100 0 1 277 633 357 Chlamydomonas reinhardtii uncharacterized protein (CHLRE_02g142687v5), mRNA blastn 25729 219 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Chlamydomonadaceae Chlamydomonas Chlamydomonas reinhardtii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;