RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "blastn", bioproject = "PRJNA1215813" and tax_clade = "Haptista"

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tax_superkingdom 1

tax_phylum 1

tax_clade 1

  • Haptista · 2 ✖

bioproject 1

  • PRJNA1215813 · 2 ✖

analysis 1

  • blastn · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9259665 9259665 PRJNA1215813_P_NODE_10828_length_248_cov_0.891429_g10748_i0 PRJNA1215813 10828 248 0.891429 2.21074392 Emiliania huxleyi 2903 Haptophyta other_Eukaryota 182 2.74e-41   NTclustered gi|551557925|ref|XM_005765918.1| 280463 g10748 i0 82.547 12.5443548387097 212 31 84 5 38 246 1573 1781 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 3111 182 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi
18897343 18897343 PRJNA1215813_P_NODE_9375_length_253_cov_0.866667_g9295_i0 PRJNA1215813 9375 253 0.866667 2.19266751 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 89.8 1.75e-13   NTclustered gi|551557907|ref|XM_005765909.1| 280463 g9295 i0 81.651 1.98814229249012 109 18 43 2 107 214 600 707 Emiliania huxleyi CCMP1516 hypothetical protein partial mRNA blastn 503 89.8 1 Eukaryota Haptista   Haptophyta   Isochrysidales Noelaerhabdaceae Emiliania Emiliania huxleyi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;