RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1215774" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1215774 · 3 ✖

analysis 1

  • blastn · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9259512 9259512 PRJNA1215774_P_NODE_77708_length_245_cov_0.895349_g77388_i0 PRJNA1215774 77708 245 0.895349 2.19360505 Pendulispora albinea 2741071 Bacteria Bacteria 171 5.85e-38   NTclustered gi|2698035964|gb|CP089984.1| 2741071 g77388 i0 81.019 7.91836734693878 216 39 88 2 29 243 2241363 2241149 Pendulispora albinea strain MSr11954 chromosome, complete genome blastn 1940 171 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Pendulisporaceae Pendulispora Pendulispora albinea
11249100 11249100 PRJNA1215774_P_NODE_76729_length_246_cov_0.890173_g76409_i0 PRJNA1215774 76729 246 0.890173 2.18982558 Archangiaceae 39 Bacteria Bacteria 169 2.11e-37   NTclustered gi|1243034522|gb|CP022098.1| 43 g76409 i0 90.551 51.4065040650407 127 12 52 0 120 246 5867045 5866919 Cystobacter fuscus strain DSM 52655 chromosome, complete genome blastn 12646 169 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Cystobacter Cystobacter fuscus
12524427 12524427 PRJNA1215774_P_NODE_71890_length_249_cov_0.875000_g71570_i0 PRJNA1215774 71890 249 0.875 2.17875 Corallococcus 83461 Bacteria Bacteria 195 3.5399999999999996e-45   NTclustered gi|380727201|gb|CP003389.1| 1144275 g71570 i0 81.301 20.5020080321285 246 40 98 6 7 249 857882 858124 Corallococcus coralloides DSM 2259, complete genome blastn 5105 196 0.994897959183674 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Myxococcaceae Corallococcus Corallococcus coralloides

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;