RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "blastn", bioproject = "PRJNA1215774" and tax_kingdom = "Thermotogati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 4 ✖

bioproject 1

  • PRJNA1215774 · 4 ✖

analysis 1

  • blastn · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7423629 7423629 PRJNA1215774_P_NODE_66826_length_254_cov_1.701657_g66506_i0 PRJNA1215774 66826 254 1.701657 4.32220878 Deinococcus 1298 Bacteria Bacteria 470 5.37e-128   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g66506 i0 100 214.834645669291 254 0 100 0 1 254 1453720 1453973 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 54568 470 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
9973824 9973824 PRJNA1215774_P_NODE_64808_length_259_cov_1.575269_g64488_i0 PRJNA1215774 64808 259 1.575269 4.07994671 Deinococcus 1298 Bacteria Bacteria 473 4.25e-129   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g64488 i0 99.614 214.166023166023 259 1 100 0 1 259 1452613 1452871 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 55469 473 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
17623416 17623416 PRJNA1215774_P_NODE_55374_length_283_cov_0.995238_g55054_i0 PRJNA1215774 55374 283 0.995238 2.81652354 Deinococcus 1298 Bacteria Bacteria 523 4.5999999999999983e-144   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g55054 i0 100 332.551236749117 283 0 100 0 1 283 1454993 1454711 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 94112 523 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142
25271690 25271690 PRJNA1215774_P_NODE_23760_length_439_cov_1.142077_g23440_i0 PRJNA1215774 23760 439 1.142077 5.01371803 Deinococcus 1298 Bacteria Bacteria 789 0   NTclustered gi|2706837832|gb|CP149782.1| 3112952 g23440 i0 99.089 194.767653758542 439 4 100 0 1 439 1455466 1455028 Deinococcus sp. VB142 chromosome 1, complete sequence blastn 85503 789 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. VB142

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;