RNAquarium Metadata Server
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contig_metadata

5 rows where analysis = "blastn", bioproject = "PRJNA1215774" and tax_kingdom = "Pararnavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 5 ✖

bioproject 1

  • PRJNA1215774 · 5 ✖

analysis 1

  • blastn · 5 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6148456 6148456 PRJNA1215774_P_NODE_41585_length_327_cov_1.212598_g41265_i0 PRJNA1215774 41585 327 1.212598 3.96519546 Gammaretrovirus 153135 Viruses Viruses 592 1.4699999999999999e-164   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g41265 i0 99.387 17.2140672782875 326 2 99 0 1 326 4614 4939 Moloney murine leukemia virus, complete genome blastn 5629 592 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7423457 7423457 PRJNA1215774_P_NODE_29586_length_389_cov_1.762658_g29266_i0 PRJNA1215774 29586 389 1.762658 6.85673962 root 1 Root_unresolved Root_unresolved 702 0   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g29266 i0 99.229 100.012853470437 389 3 100 0 1 389 2437 2825 Moloney murine leukemia virus, complete genome blastn 38905 702 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
7423626 7423626 PRJNA1215774_P_NODE_66266_length_256_cov_1.027322_g65946_i0 PRJNA1215774 66266 256 1.027322 2.62994432 Gammaretrovirus 153135 Viruses Viruses 468 1.95e-127   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g65946 i0 99.609 90.09765625 256 1 100 0 1 256 5595 5340 Moloney murine leukemia virus, complete genome blastn 23065 468 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
11248947 11248947 PRJNA1215774_P_NODE_38909_length_338_cov_1.543396_g38589_i0 PRJNA1215774 38909 338 1.543396 5.21667848 root 1 Root_unresolved Root_unresolved 625 1.4999999999999999e-174   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g38589 i0 100 26.7840236686391 338 0 100 0 1 338 5861 6198 Moloney murine leukemia virus, complete genome blastn 9053 625 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
23997797 23997797 PRJNA1215774_P_NODE_55659_length_282_cov_1.354067_g55339_i0 PRJNA1215774 55659 282 1.354067 3.81846894 Gammaretrovirus 153135 Viruses Viruses 488 1.6699999999999998e-133   NTclustered gi|331934|gb|J02255.1|MLMCG 11786 g55339 i0 97.872 98.0957446808511 282 6 100 0 1 282 4380 4099 Moloney murine leukemia virus, complete genome blastn 27663 488 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;