RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "blastn", bioproject = "PRJNA1215774" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA1215774 · 3 ✖

analysis 1

  • blastn · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2882446 2882446 PRJNA1215774_P_NODE_74043_length_248_cov_0.880000_g73723_i0 PRJNA1215774 74043 248 0.88 2.1824 Pirellulales bacterium 2715253 Bacteria Bacteria 198 2.7199999999999993e-46   NTclustered gi|2874253964|emb|OY970289.1| 2715253 g73723 i0 81.275 60.0282258064516 251 41 100 5 1 248 2299527 2299774 MAG: Pirellulales bacterium isolate MFD05442.bin.c.2 genome assembly, chromosome: 1 blastn 14887 198 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Pirellulales     Pirellulales bacterium
7984887 7984887 PRJNA1215774_P_NODE_72407_length_249_cov_0.875000_g72087_i0 PRJNA1215774 72407 249 0.875 2.17875 Tautonia plasticadhaerens 2527974 Bacteria Bacteria 263 9.56e-66   NTclustered gi|1712713678|gb|CP036426.1| 2527974 g72087 i0 86.42 96.995983935743 243 29 97 4 3 243 2114158 2114398 Tautonia plasticadhaerens strain ElP chromosome blastn 24152 263 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae Tautonia Tautonia plasticadhaerens
16908777 16908777 PRJNA1215774_P_NODE_84054_length_241_cov_0.916667_g83734_i0 PRJNA1215774 84054 241 0.916667 2.20916747 uncultured Gemmataceae bacterium 1914239 Bacteria Bacteria 243 1.2e-59   NTclustered gi|2874253853|emb|OY969909.1| 1914239 g83734 i0 85 7.28630705394191 240 35 99 1 3 241 3092219 3091980 MAG: uncultured Gemmataceae bacterium isolate MFD01275.bin.c.1 genome assembly, chromosome: 1 blastn 1756 243 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Gemmatales Gemmataceae   uncultured Gemmataceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;